View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_high_4 (Length: 498)
Name: NF3145_high_4
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 20 - 498
Target Start/End: Complemental strand, 45447601 - 45447123
Alignment:
| Q |
20 |
ctggggtatcttccacgggctgaaatttcacatttttctgagtctctagaattgcttcacgtagtctctgaaaaagaaaattatgaacaatcacaacatg |
119 |
Q |
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| T |
45447601 |
ctggggtatcttccacgggctgaaatttcacatttttctgagtctctagaattgcttcacgtagtctctgaaaaagaaaattatgaacaatcacaacatg |
45447502 |
T |
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| Q |
120 |
agataataaaaatacacaatgctttttgaactccgagtaatagcttagaaacctgaatagcattatccactgaattttcaggaaccgtccaaggaaaatc |
219 |
Q |
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| T |
45447501 |
agataataaaaatacacaatgctttttgaactctgagtaatagcttagaaacctgaatagcattatccactgaattttcaggaaccgtccaaggaaaatc |
45447402 |
T |
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| Q |
220 |
aaaagatgatgacttcgggtttgttgatatgcaaccaggatttattgatgggcaaggtctaatttttctgcaagagaaaggttacaaataatattatata |
319 |
Q |
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| T |
45447401 |
aaaagatgatgacttcgggtttgttgatatgcaaccaggatttattgatgggcaaggtctaatttttctgcaagagaaaggttacaaataatattatata |
45447302 |
T |
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| Q |
320 |
gaatccatggtattaattatgaagcatatattatatagaatccgttaagcatacccattttctaatccaagttgcaagttttttgattgagaaaaagggg |
419 |
Q |
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| T |
45447301 |
gaatccatggtattaattatgaagcatatattatatagaatccgttaagcatacccattttctaatccaagttgcaagttttttgattgagaaaaagggg |
45447202 |
T |
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| Q |
420 |
tggtactaagagtggttggagggggttgagaattgagggatgggattgcatgagaaggtagtggagatgttaatgttac |
498 |
Q |
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| T |
45447201 |
tggtactaagagtggttggagggggttgagaattgagggaagggattgcatgagaaggtagtggagatgttaatgttac |
45447123 |
T |
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