View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_low_10 (Length: 417)
Name: NF3145_low_10
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 366
Target Start/End: Original strand, 35210316 - 35210674
Alignment:
| Q |
12 |
atgaatgaaggggatgtgtatatgtattttctctcgaacgtccatgatagtcatcgttaacaaaagtccaactagtgatttatggttggcaagaggctat |
111 |
Q |
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| T |
35210316 |
atgaatgaaggggatgtgtatatgtattttctctcgaacgtccatgatagtcattgttaacaaaagtccaactagtgatttatggttggcaagaggctat |
35210415 |
T |
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| Q |
112 |
gaagggttgataaatgaattttgttaaattcatagaaggtttatttgttaaggtggtctggtgcatagaaagatcaacta-gttcagttgagacatgatg |
210 |
Q |
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| T |
35210416 |
gaaggggtgataaatgaattttgttaaattcatagaaggtttatttgttaaggtggtctggtgcatagaaagatcaactaggttcagttgagacatgatg |
35210515 |
T |
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| Q |
211 |
catctttcaaaagaagaaggatgtcttggagtaagaatttttcagtttt---tcaatgtataattgctatccaaatggctatgaaggtgcttcacaaatt |
307 |
Q |
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| T |
35210516 |
catctttcaaaagaagaaggatgtcttggagtaagaatttttcagtttttgatcaatgtatcattgctatccaaatggctatgaaggtgcttcacaaatt |
35210615 |
T |
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| Q |
308 |
caatttctatttcgttcaggttacataatcatatgtatgacccgatattagaattgttg |
366 |
Q |
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| T |
35210616 |
caatttctatttcgttcaggttacataatcatatttatgacccgatattagaattgttg |
35210674 |
T |
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