View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3145_low_11 (Length: 380)

Name: NF3145_low_11
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3145_low_11
NF3145_low_11
[»] chr5 (8 HSPs)
chr5 (1-171)||(25614248-25614418)
chr5 (298-364)||(25614079-25614145)
chr5 (13-168)||(31262373-31262525)
chr5 (231-283)||(25614136-25614188)
chr5 (302-364)||(31262222-31262284)
chr5 (70-137)||(14308504-14308571)
chr5 (76-140)||(24005041-24005105)
chr5 (76-141)||(32429500-32429563)
[»] scaffold1089 (1 HSPs)
scaffold1089 (65-141)||(690-766)
[»] chr6 (7 HSPs)
chr6 (70-141)||(7818304-7818375)
chr6 (65-141)||(14435664-14435740)
chr6 (14-115)||(7815400-7815498)
chr6 (70-141)||(7860889-7860960)
chr6 (70-141)||(10416422-10416493)
chr6 (70-114)||(7872237-7872281)
chr6 (65-141)||(14438323-14438399)
[»] chr1 (2 HSPs)
chr1 (65-141)||(37996661-37996737)
chr1 (14-131)||(28720077-28720191)
[»] chr4 (1 HSPs)
chr4 (70-141)||(14018628-14018699)
[»] chr7 (1 HSPs)
chr7 (72-141)||(19316676-19316745)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 25614418 - 25614248
Alignment:
Q  1 tctcgtaagagcttcgcattctgcaaaatatatttagcaaatcctagatcactactgtcccagtcttctaagtttaaaatagtacatgacctgaggtgac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25614418 tctcgtaagagcttcgcattctgcaaaatatatttagcaaatcctagatcactactgtcccagtcttctaagtttaaaatagtacatgacctgaggtgac 25614319  T
Q  101 acgaaatacattcaagagccaaaattgggcatttccattccatgggtagactccaattccactgtaagagg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25614318 acgaaatacattcaagagccaaaattgggcatttccattccatgggtagactccaattccactgtaagagg 25614248  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 25614145 - 25614079
Alignment:
Q  298 aaagtggagtctacaaacccttctgatgaaaagaacttgaagctttgggcattgctggagcaattct 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25614145 aaagtggagtctacaaacccttctgatgaaaagaacttgaagctttgggcattgctggagcaattct 25614079  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 31262525 - 31262373
Alignment:
Q  13 ttcgcattctgcaaaatatatttagcaaatcctagatcactactgtcccagtcttctaagtttaaaatagtacatgacctgaggtgacacgaaatacatt 112  Q
    ||||||||||||||||||||| |||||||||  | ||||   ||| || || |||  |||| ||| |||||||||||||| | |||||||||||||||||    
T  31262525 ttcgcattctgcaaaatatatgtagcaaatcgcatatcat--ctg-ccgagcctttgaagtctaatatagtacatgacctcaagtgacacgaaatacatt 31262429  T
Q  113 caagagccaaaattgggcatttccattccatgggtagactccaattccactgtaag 168  Q
    ||||||||||||||||||||||||||||| ||  ||||||| |  |||||||||||    
T  31262428 caagagccaaaattgggcatttccattccttgtctagactcgagatccactgtaag 31262373  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 25614188 - 25614136
Alignment:
Q  231 ccattgagataaaatgaaaattagagatcaagaatgttgttcaaaagtggagt 283  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25614188 ccattgagataaaatgaaaattagaggtcaagaatgttgttcaaaagtggagt 25614136  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 31262284 - 31262222
Alignment:
Q  302 tggagtctacaaacccttctgatgaaaagaacttgaagctttgggcattgctggagcaattct 364  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||||||    
T  31262284 tggagtctacaaacccttctcacaaaaagaacttgaagctttgggcaatgctggagcaattct 31262222  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 14308571 - 14308504
Alignment:
Q  70 aagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttcca 137  Q
    |||||||||||||||||||| ||||||||  || ||| |||||||||||||||| |||| ||||||||    
T  14308571 aagtttaaaatagtacatgatctgaggtgtgacaaaacacattcaagagccaaacttggacatttcca 14308504  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 24005041 - 24005105
Alignment:
Q  76 aaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattc 140  Q
    |||||||||||||| ||||||||| | |||| ||||||| || || |||||||||||||||||||    
T  24005041 aaaatagtacatgatctgaggtgagaagaaacacattcaggaaccgaaattgggcatttccattc 24005105  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 32429500 - 32429563
Alignment:
Q  76 aaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 141  Q
    |||||||||||||||||||||||  ||||||  ||||||||||   |||||||||| |||||||||    
T  32429500 aaaatagtacatgacctgaggtg--acgaaacgcattcaagagttgaaattgggcagttccattcc 32429563  T

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Target: scaffold1089 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 690 - 766
Alignment:
Q  65 cttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 141  Q
    |||| ||||||||||| |||||||| ||||||||| |||||| |||||||||| || || |||| ||||||||||||    
T  690 cttcaaagtttaaaattgtacatgatctgaggtgagacgaaacacattcaagaaccgaatttggccatttccattcc 766  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 7818375 - 7818304
Alignment:
Q  70 aagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 141  Q
    ||||||||||||||||||||  |||||| | |||||| |||||||||| |||||||| || |||||||||||    
T  7818375 aagtttaaaatagtacatgatttgaggttagacgaaacacattcaagaaccaaaatttggtatttccattcc 7818304  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 14435664 - 14435740
Alignment:
Q  65 cttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 141  Q
    |||| ||||||||||| |||||||| ||||||||| |||||| |||||||| | || || |||| ||||||||||||    
T  14435664 cttcaaagtttaaaattgtacatgatctgaggtgagacgaaacacattcaataaccgaatttggccatttccattcc 14435740  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 7815498 - 7815400
Alignment:
Q  14 tcgcattctgcaaaatatatttagcaaatcctagatcactactgtcccagtcttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattc 113  Q
    |||||||||||||||||||||| | |||||  |||||| |    ||| || ||| ||||||||||||||||||||| ||||||||| | |||| ||||||    
T  7815498 tcgcattctgcaaaatatattttgtaaatcgaagatcattt---tccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacattc 7815402  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 7860960 - 7860889
Alignment:
Q  70 aagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 141  Q
    ||||||| || | ||||||| ||||||||| ||||||| |||| | || || ||||||||||||||||||||    
T  7860960 aagtttagaacaatacatgatctgaggtgagacgaaatgcatttaggaaccgaaattgggcatttccattcc 7860889  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 10416493 - 10416422
Alignment:
Q  70 aagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 141  Q
    |||||||| ||||||||||| || |||| | |||||   ||||||||| ||||||||||| |||||||||||    
T  10416493 aagtttaatatagtacatgatctaaggttagacgaatcccattcaagaaccaaaattgggtatttccattcc 10416422  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 7872281 - 7872237
Alignment:
Q  70 aagtttaaaatagtacatgacctgaggtgacacgaaatacattca 114  Q
    |||||||||||||||||||| || |||||| |||||| |||||||    
T  7872281 aagtttaaaatagtacatgatctaaggtgagacgaaacacattca 7872237  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 14438323 - 14438399
Alignment:
Q  65 cttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 141  Q
    |||| ||||||||||| ||||| || ||||||||| |||||| ||| ||| || || || ||||| |||||||||||    
T  14438323 cttcaaagtttaaaattgtacaggatctgaggtgaaacgaaacacactcaggaaccgaatttgggtatttccattcc 14438399  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 37996661 - 37996737
Alignment:
Q  65 cttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 141  Q
    |||| |||||||||||||||||||| || |||||| |||||||||| |||||| |   || ||||||||||||||||    
T  37996661 cttcaaagtttaaaatagtacatgatcttaggtgagacgaaatacactcaagaactgcaactgggcatttccattcc 37996737  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 28720077 - 28720191
Alignment:
Q  14 tcgcattctgcaaaatatatttagcaaatcctagatcactactgtcccagtcttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattc 113  Q
    |||||||||||| |||||| || |||||||  |||||| |    ||| || |||| || ||||||||||||||||||||||||||| ||  || ||||||    
T  28720077 tcgcattctgcagaatatactttgcaaatcggagatcattt---tccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattc 28720173  T
Q  114 aagagccaaaattgggca 131  Q
    || | |||||||||||||    
T  28720174 aatacccaaaattgggca 28720191  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 14018699 - 14018628
Alignment:
Q  70 aagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 141  Q
    |||||||||||||||||||| || || ||| |||||| ||||||||||    ||||||||||||||||||||    
T  14018699 aagtttaaaatagtacatgatctaagatgagacgaaacacattcaagatttgaaattgggcatttccattcc 14018628  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 19316676 - 19316745
Alignment:
Q  72 gtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 141  Q
    ||||||| | |||||||| || |||||| | |||| |||||||||| |  ||||||||||||||||||||    
T  19316676 gtttaaagttgtacatgatctaaggtgagatgaaacacattcaagaactgaaattgggcatttccattcc 19316745  T

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