View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3145_low_12 (Length: 364)

Name: NF3145_low_12
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3145_low_12
NF3145_low_12
[»] chr4 (4 HSPs)
chr4 (184-364)||(28288177-28288358)
chr4 (176-248)||(28288051-28288123)
chr4 (227-281)||(530755-530809)
chr4 (232-282)||(19601025-19601075)
[»] chr7 (5 HSPs)
chr7 (226-281)||(48103398-48103453)
chr7 (227-261)||(20184345-20184379)
chr7 (227-281)||(34052310-34052364)
chr7 (227-281)||(38883252-38883306)
chr7 (238-282)||(28723568-28723612)
[»] chr3 (8 HSPs)
chr3 (227-281)||(13078249-13078303)
chr3 (226-279)||(38125267-38125320)
chr3 (226-282)||(12789636-12789692)
chr3 (227-281)||(3970577-3970631)
chr3 (227-281)||(21969243-21969297)
chr3 (227-281)||(21991679-21991733)
chr3 (227-281)||(36329266-36329320)
chr3 (227-281)||(36822846-36822900)
[»] chr2 (8 HSPs)
chr2 (226-281)||(22269752-22269807)
chr2 (226-281)||(34490486-34490541)
chr2 (227-261)||(2818697-2818731)
chr2 (227-281)||(3116907-3116961)
chr2 (227-281)||(12850628-12850682)
chr2 (227-281)||(16705764-16705818)
chr2 (227-281)||(24101918-24101972)
chr2 (227-255)||(20892997-20893025)
[»] chr1 (4 HSPs)
chr1 (227-282)||(19797066-19797121)
chr1 (227-281)||(3607815-3607869)
chr1 (227-281)||(5189500-5189554)
chr1 (227-281)||(50627162-50627216)
[»] chr8 (1 HSPs)
chr8 (227-281)||(29781045-29781099)
[»] chr6 (4 HSPs)
chr6 (227-281)||(3369016-3369070)
chr6 (227-281)||(8091093-8091147)
chr6 (227-260)||(14393592-14393625)
chr6 (226-278)||(20501736-20501788)
[»] chr5 (2 HSPs)
chr5 (227-281)||(1138590-1138644)
chr5 (227-281)||(21261974-21262028)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 184 - 364
Target Start/End: Original strand, 28288177 - 28288358
Alignment:
Q  184 gtggctctctaatgattgttagaaggataaaatttagtgcacttttt-cgtatgattcttaactaaaaatacacattttatgtacataacatactttgaa 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  28288177 gtggctctctaaagattgttagaaggataaaatttagtgcacttttttcatatgatttttaactaaaaatacacattttatgtacataacatgctttgaa 28288276  T
Q  283 ccatacaaaaaggaaatgcacgtattttccttgttagaatctcaatttttcagtatattgttatatttgaataaataaatta 364  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28288277 ccatataaaaaggaaatgcacgtattttccttgttagaatctcaatttttcagtatattgttatatttgaataaataaatta 28288358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 28288051 - 28288123
Alignment:
Q  176 ggtagtgagtggctctctaatgattgttagaaggataaaatttagtgcactttttcgtatgattcttaactaa 248  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||    
T  28288051 ggtagtgagtggctctctaatgattgttagatggattaaatttagtgccctttttcgtatgattcttaactaa 28288123  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 530809 - 530755
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  530809 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 530755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 19601075 - 19601025
Alignment:
Q  232 gtatgattcttaactaaaaatacacattttatgtacataacatactttgaa 282  Q
    ||||||||||||| |||||||||||||||| | || |||||| ||||||||    
T  19601075 gtatgattcttaattaaaaatacacattttttttaaataacaaactttgaa 19601025  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 48103398 - 48103453
Alignment:
Q  226 tttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||||||||||||||||||||||| ||||| || | |||||| |||||||    
T  48103398 tttttcgtatgattcttaactaaaaatacatattttttggatataacaaactttga 48103453  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 261
Target Start/End: Complemental strand, 20184379 - 20184345
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacatttt 261  Q
    ||||||||||||||||||||||||||||| |||||    
T  20184379 ttttcgtatgattcttaactaaaaatacatatttt 20184345  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 34052310 - 34052364
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  34052310 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 34052364  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 38883252 - 38883306
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  38883252 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 38883306  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 28723568 - 28723612
Alignment:
Q  238 ttcttaactaaaaatacacattttatgtacataacatactttgaa 282  Q
    ||||||||||||||||||||||||||| | |||| | ||||||||    
T  28723568 ttcttaactaaaaatacacattttatggatataataaactttgaa 28723612  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 13078303 - 13078249
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    ||||||||||||||||||||||||||||| ||||| || | |||||| |||||||    
T  13078303 ttttcgtatgattcttaactaaaaatacatattttttggatataacaaactttga 13078249  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 38125320 - 38125267
Alignment:
Q  226 tttttcgtatgattcttaactaaaaatacacattttatgtacataacatacttt 279  Q
    ||||||||||| |||||||||||||||||| ||||| |||| |||||| |||||    
T  38125320 tttttcgtatggttcttaactaaaaatacatattttttgtatataacaaacttt 38125267  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 12789636 - 12789692
Alignment:
Q  226 tttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttgaa 282  Q
    ||||||||||| |||||||||||||||||| ||||| || | |||||| ||||||||    
T  12789636 tttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgaa 12789692  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 3970631 - 3970577
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  3970631 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 3970577  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 21969297 - 21969243
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  21969297 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 21969243  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 21991733 - 21991679
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  21991733 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 21991679  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 36329320 - 36329266
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  36329320 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 36329266  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 36822900 - 36822846
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  36822900 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 36822846  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 22269752 - 22269807
Alignment:
Q  226 tttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||||||| ||||||||||||||| ||||| || | |||||| |||||||    
T  22269752 tttttcgtatgatttttaactaaaaatacatattttttggatataacaaactttga 22269807  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 34490486 - 34490541
Alignment:
Q  226 tttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    ||||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  34490486 tttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 34490541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 261
Target Start/End: Original strand, 2818697 - 2818731
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacatttt 261  Q
    ||||||||||||||||||||||||||||| |||||    
T  2818697 ttttcgtatgattcttaactaaaaatacatatttt 2818731  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 3116907 - 3116961
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  3116907 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 3116961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 12850682 - 12850628
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  12850682 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 12850628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 16705764 - 16705818
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  16705764 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 16705818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 24101972 - 24101918
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  24101972 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 24101918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 20893025 - 20892997
Alignment:
Q  227 ttttcgtatgattcttaactaaaaataca 255  Q
    |||||||||||||||||||||||||||||    
T  20893025 ttttcgtatgattcttaactaaaaataca 20892997  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 19797121 - 19797066
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttgaa 282  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| ||||||||    
T  19797121 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgaa 19797066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 3607869 - 3607815
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  3607869 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 3607815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 5189500 - 5189554
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  5189500 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 5189554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 50627162 - 50627216
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  50627162 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 50627216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 29781099 - 29781045
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  29781099 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 29781045  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 3369016 - 3369070
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  3369016 ttttcgtatggttcttaactaaaaatacatattttttgaatataacaaactttga 3369070  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 8091093 - 8091147
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  8091093 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 8091147  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Original strand, 14393592 - 14393625
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattt 260  Q
    ||||||||||||||||||||||||||||| ||||    
T  14393592 ttttcgtatgattcttaactaaaaatacatattt 14393625  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 20501736 - 20501788
Alignment:
Q  226 tttttcgtatgattcttaactaaaaatacacattttatgtacataacatactt 278  Q
    ||||||||||| |||||||||||||||||| ||||| || | |||||| ||||    
T  20501736 tttttcgtatggttcttaactaaaaatacatattttttggatataacaaactt 20501788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 1138590 - 1138644
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  1138590 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 1138644  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 21261974 - 21262028
Alignment:
Q  227 ttttcgtatgattcttaactaaaaatacacattttatgtacataacatactttga 281  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||| |||||||    
T  21261974 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttga 21262028  T

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