View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_low_13 (Length: 339)
Name: NF3145_low_13
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_low_13 |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 22 - 233
Target Start/End: Original strand, 15856374 - 15856585
Alignment:
| Q |
22 |
ggcatatcgaaattgagtttcttccatgagtcactttgcaaactatatatctcagagaaagatttaggcgtcaaatcatcccaaagacaatcattaaatg |
121 |
Q |
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| T |
15856374 |
ggcatatccaaatcgagtttcctccatgagtcactttgcaaactatatatctcaaagaaagacttaggcatcaaatcatcccaaagacaataattaaatg |
15856473 |
T |
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| Q |
122 |
acatgtaaaacacatgttgaatgactttgaagtcatcgctaacatggtcatagccaaatccatgcagactaatgtcagtattaaacccatgtgaaaactc |
221 |
Q |
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| T |
15856474 |
aaatgtaaaacacatgttgaatgactttgaagtcatcactaacattatcatagccaaatccatgcaaactaatgtcaataataaatccagatgaaaactc |
15856573 |
T |
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| Q |
222 |
accatgaccagg |
233 |
Q |
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| T |
15856574 |
accatgaccagg |
15856585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 15861504 - 15861590
Alignment:
| Q |
235 |
agaatgaccttaatttcctcggtagctgggtttaataatatagcctttgtatgattgtaacaattgtagatacaaagagtaccatta |
321 |
Q |
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| T |
15861504 |
agaatgaccttaatttcctcggtagttgggtttaataatatagcctctgtatgattgtaacaattgtagatacaaagagtaccatta |
15861590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 2703391 - 2703338
Alignment:
| Q |
132 |
cacatgttgaatgactttgaagtcatcgctaacatggtcatagccaaatccatg |
185 |
Q |
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| T |
2703391 |
cacatgttgaatgactttatagtcatccctaacatggtcataaccaaatccatg |
2703338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 17603 - 17648
Alignment:
| Q |
140 |
gaatgactttgaagtcatcgctaacatggtcatagccaaatccatg |
185 |
Q |
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| T |
17603 |
gaatgactttgtagtcatctctaacatggtcataaccaaatccatg |
17648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 40399352 - 40399405
Alignment:
| Q |
132 |
cacatgttgaatgactttgaagtcatcgctaacatggtcatagccaaatccatg |
185 |
Q |
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| T |
40399352 |
cacacgttgaatgactttgtagtcatctctaacatagtcatagcgaaatccatg |
40399405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 27717414 - 27717466
Alignment:
| Q |
133 |
acatgttgaatgactttgaagtcatcgctaacatggtcatagccaaatccatg |
185 |
Q |
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| T |
27717414 |
acatattgaatgattttatagtcatctctaacatggtcatagccaaatccatg |
27717466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 27724737 - 27724789
Alignment:
| Q |
133 |
acatgttgaatgactttgaagtcatcgctaacatggtcatagccaaatccatg |
185 |
Q |
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| T |
27724737 |
acatattgaatgaccttgtagtcatctcgaacatggtcataaccaaatccatg |
27724789 |
T |
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