View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3145_low_15 (Length: 290)

Name: NF3145_low_15
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3145_low_15
NF3145_low_15
[»] chr6 (12 HSPs)
chr6 (19-284)||(33643745-33644010)
chr6 (33-209)||(33263394-33263570)
chr6 (46-209)||(33058320-33058483)
chr6 (55-209)||(33401377-33401531)
chr6 (57-230)||(33305223-33305392)
chr6 (126-209)||(33359472-33359555)
chr6 (54-209)||(33286302-33286457)
chr6 (40-209)||(31561970-31562139)
chr6 (54-209)||(9167523-9167678)
chr6 (56-209)||(33272555-33272709)
chr6 (54-198)||(33388809-33388953)
chr6 (50-204)||(33410701-33410855)
[»] chr2 (1 HSPs)
chr2 (46-229)||(17439990-17440170)
[»] chr4 (7 HSPs)
chr4 (92-207)||(31157992-31158107)
chr4 (52-206)||(31503299-31503453)
chr4 (92-145)||(31484024-31484077)
chr4 (68-207)||(31149118-31149257)
chr4 (50-132)||(31498063-31498145)
chr4 (52-204)||(31527180-31527332)
chr4 (169-207)||(31491076-31491114)
[»] scaffold1408 (1 HSPs)
scaffold1408 (92-210)||(1384-1502)
[»] scaffold0428 (1 HSPs)
scaffold0428 (92-210)||(7130-7248)


Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 33643745 - 33644010
Alignment:
19 aaagtgcggttggcatatcttagaaagcccaagttgtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33643745 aaagtgcggttggcatatcttagaaagcccaagttgtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaat 33643844  T
119 tttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttatatattatta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33643845 tttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttatatattatta 33643944  T
219 atgtttatcttacaattgtcatacaatcaaagtaatgtatttatttttcttggcttttcatctcac 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
33643945 atgtttatcttacaattgtcatacaatcaaagtaatgtatttatttttcttggcttttcatgtcac 33644010  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 209
Target Start/End: Complemental strand, 33263570 - 33263394
Alignment:
33 atatcttagaaagcccaagttgtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatca 132  Q
    |||||| || |||||||||||||||||||||  |||| ||||||||||| ||| ||   |||||||  | || ||||||||||| |||||| |||||| |    
33263570 atatctcaggaagcccaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatga 33263471  T
133 acttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttat 209  Q
    ||||||||||||| |||||  ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
33263470 acttgtagaattgatcttggtgaaaagcaacattacacaactatggaaaaacaagaaggtactataaattctcttat 33263394  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 33058483 - 33058320
Alignment:
46 cccaagttgtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattg 145  Q
    |||||| |||||||| ||  ||||||||| |||| |||||  ||  ||||||| || || |||||||||||||||||| |||||| ||||||||||||||    
33058483 cccaagctgtctttcgaacaaattaagatttgttcactggtttagatatccttccaagtatttgccatcaaattttcaccccaatgaacttgtagaattg 33058384  T
146 ttcttgaagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttat 209  Q
     |||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||| ||||    
33058383 atcttgacggagagcaacattaaacaactatggaaaaacaagaaggtactataaattctattat 33058320  T

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Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 55 - 209
Target Start/End: Complemental strand, 33401531 - 33401377
Alignment:
55 tctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaag 154  Q
    ||||||||| ||||||||||||||||| ||||||   |||||||||| || ||||||| ||| |||||| |||||| |||||||||||||| |||||  |    
33401531 tctttcaaacgaattaagatatgttgattggcatgaatatcctttcaagtatttgccaacaagttttcaccccaatgaacttgtagaattgatcttgtgg 33401432  T
155 aagagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttat 209  Q
       |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
33401431 tgtagcaacattaaacaactatggaaaaacaagaaggtactataaattctcttat 33401377  T

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Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 230
Target Start/End: Complemental strand, 33305392 - 33305223
Alignment:
57 tttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaa 156  Q
    |||||||  |||||| ||||||||| ||||||   |||||||| | || |||||||||||||||||| |||||| |||||||||||||| |||| ||||     
33305392 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagag 33305293  T
157 gagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttatatattattaatgtttatctta 230  Q
     ||||| |||  ||||||||||| ||||||||||||| ||||||||||||    ||||||||||||||||||||    
33305292 cagcaaaattgaacaactatggacaaacaagaaggtactataaattctct----tattattaatgtttatctta 33305223  T

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Target: chr6; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 33359555 - 33359472
Alignment:
126 ccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttat 209  Q
    ||||| |||||||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||    
33359555 ccaatgaacttgtagaattgatcttgaagaaaagcagcattaaacaactatggaaaaacaagaaggtaatataaattctcttat 33359472  T

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Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 33286457 - 33286302
Alignment:
54 gtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaa 153  Q
    ||||||||||  |||||||||||||| | |||  |   ||||||||||  | |||||||||||||||||| |||||| |||||||||||||| ||||| |    
33286457 gtctttcaaacaaattaagatatgttcagtggactggatatcctttcaaatatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgca 33286358  T
154 gaagagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttat 209  Q
     |  |||||||||| ||||||||||| ||| ||||||||| |||||||| ||||||    
33286357 tagtagcaacattaaacaactatggagaaagaagaaggtactataaattatcttat 33286302  T

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Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 31561970 - 31562139
Alignment:
40 agaaagcccaagttgtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgta 139  Q
    ||||||||| | ||||||||| ||  |||||||||||||||| |||| |   |||||||||| || ||||||||||| |||||| ||| || ||||||||    
31561970 agaaagcccgaattgtctttcgaacaaattaagatatgttgagtggcttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgta 31562069  T
140 gaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttat 209  Q
    |||||| |||||  ||  |||| |||||  |||||||||| ||||||||||||| | |||||| ||||||    
31562070 gaattgatcttggcgagaagcagcattacgcaactatggacaaacaagaaggtactgtaaattatcttat 31562139  T

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Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 9167678 - 9167523
Alignment:
54 gtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaa 153  Q
    ||||||| || |||||||||||| |||| ||| ||   |||||||||| || ||||||||| | ||||||  ||||| |||||||| || || |||||||    
9167678 gtctttcgaacgaattaagatatcttgagtggtatcgatatcctttcaagtatttgccatcgagttttcacgccaatgaacttgtacaactgatcttgaa 9167579  T
154 gaagagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttat 209  Q
       ||||||||||| |||||||||||||||||| |||||| |||||| ||||||||    
9167578 ctggagcaacattaaacaactatggaaaaacaaaaaggtactataaactctcttat 9167523  T

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Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 209
Target Start/End: Complemental strand, 33272709 - 33272555
Alignment:
56 ctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaaga 155  Q
    |||||||| | ||||||||||||||| ||| ||   |||||||||| |||| | ||| ||| |||||| |||||| | ||| |||||||| |||||| ||    
33272709 ctttcaaatgcattaagatatgttgagtgggatggatatcctttcaagtgtctaccaacaagttttcaccccaatgaccttatagaattgatcttgatga 33272610  T
156 agagcaacattagacaactatggaaaaacaagaaggta-atataaattctcttat 209  Q
    | ||| |||| | |||||||||||||||||||||||||  |||||||||| ||||    
33272609 atagcgacatcaaacaactatggaaaaacaagaaggtacctataaattctattat 33272555  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 198
Target Start/End: Complemental strand, 33388953 - 33388809
Alignment:
54 gtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaa 153  Q
    ||||||||||   ||||||||||||||| ||| ||   |||||||||| || ||||||||||| |||||| |||| | | |||||||| ||| ||||||     
33388953 gtctttcaaacacattaagatatgttgagtggaattattatcctttcaagtatttgccatcaagttttcaccccagtgatcttgtagagttgatcttgat 33388854  T
154 gaagagcaacattagacaactatggaaaaacaagaaggtaatata 198  Q
    | | ||| |||| | |||||||||||| |||||||||||| ||||    
33388853 gtatagcgacatcaaacaactatggaagaacaagaaggtattata 33388809  T

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Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 204
Target Start/End: Complemental strand, 33410855 - 33410701
Alignment:
50 agttgtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttct 149  Q
    ||||||||||||||  ||||||| ||| |||||||| |    |||||||||  |   ||||||| || |||||| || ||| ||||||| |||||| |||    
33410855 agttgtctttcaaacaaattaaggtattttgactgggagcattatcctttctgggaattgccattaagttttcaccctaatgaacttgttgaattgatct 33410756  T
150 tgaagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattct 204  Q
    ||||||| |||| | | | |||||||||||||| |||||||||| ||||||||||    
33410755 tgaagaatagcagcttcaaacaactatggaaaagcaagaaggtactataaattct 33410701  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 229
Target Start/End: Original strand, 17439990 - 17440170
Alignment:
46 cccaagttgtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattg 145  Q
    ||||||||||||||| ||  |||||||||||||||| |||| ||  |||||||||| || ||||||| ||| |||||| |||||| |||| |||||||||    
17439990 cccaagttgtctttcgaacaaattaagatatgttgagtggcctaaatatcctttcaagtatttgccaacaagttttcaccccaatgaactagtagaattg 17440089  T
146 ttcttgaagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttatatattattaatgtttatctt 229  Q
     | ||| |   ||||||||||| | | |||||||||||||||||||||  ||||||||||||||   | |||||||||||||||    
17440090 attttggatgggagcaacattaaaaacctatggaaaaacaagaaggtaccataaattctcttat---taattaatgtttatctt 17440170  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 31158107 - 31157992
Alignment:
92 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 191  Q
    |||||||||| || ||||||| ||  ||||||||||||||||||||| |||||| || ||| | | |||| | | | ||||||||||||| |||||||||    
31158107 tatcctttcaagtatttgccagcatgttttcagcccaatcaacttgttgaattgatcatgaggcatagcagcgtcaaacaactatggaaagacaagaagg 31158008  T
192 taatataaattctctt 207  Q
    || |||||||||||||    
31158007 tactataaattctctt 31157992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 206
Target Start/End: Original strand, 31503299 - 31503453
Alignment:
52 ttgtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttg 151  Q
    ||||||||| || ||||||||||||||||| |||  |   |||||||||| || |||||| |||| ||||||||| ||||||||||| || ||| |||||    
31503299 ttgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccgtcaagttttcagccaaatcaacttgttgagttgatcttg 31503398  T
152 aagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattctct 206  Q
    ||||  |||| |||   |||| ||||| || ||||||||||| | ||||| ||||    
31503399 aagagtagcagcatcgaacaattatgggaagacaagaaggtactctaaatcctct 31503453  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 31484024 - 31484077
Alignment:
92 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattg 145  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||    
31484024 tatcctttcatgtatttgccatcaaattttcggcccaatcaacttgttgaattg 31484077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 31149257 - 31149118
Alignment:
68 ttaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacatta 167  Q
    ||||||||||| || ||| |||  |||||||||| || ||||||||||| ||||| ||| ||||||||||| |||||| |||||| | | ||||   | |    
31149257 ttaagatatgtcgagtggaatagatatcctttcaagtatttgccatcaagttttctgcctaatcaacttgtcgaattgatcttgaggtatagcagtgtca 31149158  T
168 gacaactatggaaaaacaagaaggtaatataaattctctt 207  Q
     ||| ||||||||| | ||||||||| |||| ||||||||    
31149157 aacagctatggaaagataagaaggtactatacattctctt 31149118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 31498063 - 31498145
Alignment:
50 agttgtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatca 132  Q
    ||||||||||| ||  ||||||||||| |||| ||||||   ||||||||||||| ||| ||||||||||||||||| |||||    
31498063 agttgtctttccaacaaattaagatattttgagtggcatgaatatcctttcatgtatttaccatcaaattttcagcctaatca 31498145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 204
Target Start/End: Complemental strand, 31527332 - 31527180
Alignment:
52 ttgtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttg 151  Q
    |||| |||| || ||||||||||||||||| ||||     ||||||||||||| ||||||||||| |||||| ||| | |||||||| || ||| |||||    
31527332 ttgtatttctaatgaattaagatatgttgagtggcgggaatatcctttcatgtatttgccatcaagttttcaaccctaccaacttgttgagttgatcttg 31527233  T
152 aagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattct 204  Q
     |  | |||| ||| | |||||||||| ||  || ||||||||| ||||||||    
31527232 gaagatagcagcatcaaacaactatgggaaggcacgaaggtaatctaaattct 31527180  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 31491076 - 31491114
Alignment:
169 acaactatggaaaaacaagaaggtaatataaattctctt 207  Q
    ||||||||||||| ||||||||||| |||||||||||||    
31491076 acaactatggaaagacaagaaggtactataaattctctt 31491114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 1502 - 1384
Alignment:
92 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 191  Q
    |||||||||| || | ||||||||| |||||| ||   | |||||||||||||| | |||  ||  |||  ||||| |||||||||||||||||||||||    
1502 tatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagctgcattaaacaactatggaaaaacaagaagg 1403  T
192 taatataaattctcttata 210  Q
    || ||||||||||||||||    
1402 tactataaattctcttata 1384  T

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Target: scaffold0428 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 7248 - 7130
Alignment:
92 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 191  Q
    |||||||||| || | ||||||||| |||||| ||   | |||||||||||||| | |||  ||  |||  ||||| |||||||||||||||||||||||    
7248 tatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagctgcattaaacaactatggaaaaacaagaagg 7149  T
192 taatataaattctcttata 210  Q
    || ||||||||||||||||    
7148 tactataaattctcttata 7130  T

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