View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3145_low_16 (Length: 288)
Name: NF3145_low_16
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_low_16 |
 | |
|
| [»] scaffold1089 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 54 - 269
Target Start/End: Complemental strand, 25614670 - 25614455
Alignment:
| Q |
54 |
ttatacttatcaattttactagacgactaaatgttctccaaaccatcaatctaattggttgcatataattagatgagaaactaattggaacacactgata |
153 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25614670 |
ttatacttatcaattttactagacgattaaatgttctccaaaccatcaatctaattggttgcatataattagatgagaaactaattgaaacacactgata |
25614571 |
T |
|
| Q |
154 |
attctagtaagtactcctgggtaaatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttgactattttgcataagtaa |
253 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25614570 |
actctagtaagtactcctgggtaaatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttgactattttgcataagtaa |
25614471 |
T |
|
| Q |
254 |
cccatttgagcagcaa |
269 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25614470 |
cccatttgagcagcaa |
25614455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 68 - 244
Target Start/End: Complemental strand, 31262759 - 31262584
Alignment:
| Q |
68 |
tttactagacgactaaatgttctccaaaccatcaatctaattggttgcatataattagatgagaaactaattggaacacactgataattctagtaagtac |
167 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| || || || |||||||||||||||| || |
|
|
| T |
31262759 |
tttactagaagagtaaatgttctccaaaccatcaaattaattggttgcatataattagattataaactaaatgaaaaacgctgataattctagtaacta- |
31262661 |
T |
|
| Q |
168 |
tcctgggtaaatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttgactattttg |
244 |
Q |
| |
|
| ||| |||| ||||| |||||| || |||||| || |||||||| |||| |||||| | ||| | |||||||| |
|
|
| T |
31262660 |
tactgttgaaataatagtctacatctcgttgaaatctttcgacatgagaataattcttctctgattggcctattttg |
31262584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 32429344 - 32429410
Alignment:
| Q |
183 |
agtttacatcccggagaaatccttggacatgaggataactcttctataatttgactattttgcataa |
249 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||| |||||| |||| |
|
|
| T |
32429344 |
agtttacatcccggagacatccttggacaagaggacaactcttctataacttgataattttggataa |
32429410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 23940052 - 23940112
Alignment:
| Q |
176 |
aaatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttga |
236 |
Q |
| |
|
|||||| ||||| ||| | ||||| ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
23940052 |
aaatgaaagtttgcattcaggagacatccttggacaggaggataattcttctataatttga |
23940112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 24004879 - 24004920
Alignment:
| Q |
195 |
ggagaaatccttggacatgaggataactcttctataatttga |
236 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
24004879 |
ggagacatccttggacaggaggataactcttgtataatttga |
24004920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 14438148 - 14438209
Alignment:
| Q |
177 |
aatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttgact |
238 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
14438148 |
aatgaaagtttacatgctggagaaatccttggacaagaggataattcttctataatttgact |
14438209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 14435489 - 14435544
Alignment:
| Q |
183 |
agtttacatcccggagaaatccttggacatgaggataactcttctataatttgact |
238 |
Q |
| |
|
||||||||| | ||||| ||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
14435489 |
agtttacatgcaggagatatccttggacaagaagataattcttctataatttgact |
14435544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 521 - 572
Alignment:
| Q |
183 |
agtttacatcccggagaaatccttggacatgaggataactcttctataattt |
234 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
521 |
agtttacatgctggagaaatccttggacaagaggacaattcttctataattt |
572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University