View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_low_18 (Length: 257)
Name: NF3145_low_18
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 4710060 - 4709812
Alignment:
| Q |
1 |
tcagtgaaccaatgtctggcaactctggcattctttgggattggagtgaacctagtggtattcctgacaagggtggtaggacaaaataacgcggaagccg |
100 |
Q |
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| T |
4710060 |
tcagtgaaccaatgtctggcaactctggcattctttgggattggagtgaacctagtggtattcctgacaagggtggtaggacaaaataatgcagaagccg |
4709961 |
T |
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| Q |
101 |
ccaacaacgtgagcaaatggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgt |
200 |
Q |
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| T |
4709960 |
ccaacaacgtgagcaaatggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgt |
4709861 |
T |
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| Q |
201 |
ctttcaggtcatttttgtaattgtaagtaacgcctctcagtttcatctc |
249 |
Q |
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| T |
4709860 |
ctttcaggtcatttttgtaattgtaagtaacgcctctcagtttcatctc |
4709812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 40742294 - 40742522
Alignment:
| Q |
2 |
cagtgaaccaatgtctggcaactctggcattctttgggattggagtgaacctagtggtattcctgacaagggtggtaggacaaaataacgcggaagccgc |
101 |
Q |
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| T |
40742294 |
cagtgaaccaaggtctagcaaccttagcattctttggagttggagtgaacctagttctgttcttgacaagggtgttgggtcaagataatgctgctgctgc |
40742393 |
T |
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| Q |
102 |
caacaacgtgagcaaatggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgtc |
201 |
Q |
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| T |
40742394 |
taacaatgtcagcaagtggactggcacagtttacatcttctctcttgttggtgctttccttagtgattcttattggggaagatacaaaacatgtgctatc |
40742493 |
T |
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| Q |
202 |
tttcaggtcatttttgtaattgtaagtaa |
230 |
Q |
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| T |
40742494 |
tttcaaggcatttttgtaaccgtaagtaa |
40742522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 2743494 - 2743576
Alignment:
| Q |
103 |
aacaacgtgagcaaatggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagata |
185 |
Q |
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||||| |||||||| ||||| || || ||||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||| |
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| T |
2743494 |
aacaatgtgagcaagtggacagggacagtttacatcttttctcttcttggagctttcctcagtgactcttactggggaagata |
2743576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 3804657 - 3804575
Alignment:
| Q |
103 |
aacaacgtgagcaaatggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagata |
185 |
Q |
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||||| || ||||| |||||||||||||||||||| || || || ||||||| ||||| ||||| ||||||||||||||||| |
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| T |
3804657 |
aacaatgtcagcaagtggactggaactgtttacattttttcactcttgggagcattccttagtgattcttattggggaagata |
3804575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 396068 - 396157
Alignment:
| Q |
118 |
tggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgtctttcag |
207 |
Q |
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|||||||||||||||||||| || || || ||||||| ||||| ||||| ||||||||||||||||| |||||| ||| |||||||| |
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| T |
396068 |
tggactggaactgtttacatattttcactcttgggagcattccttagtgattcttattggggaagatacttaacatgcgctatctttcag |
396157 |
T |
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