View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_low_19 (Length: 254)
Name: NF3145_low_19
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 32215934 - 32215695
Alignment:
| Q |
1 |
aaaacaatttctcaatctcccaaagaagtcagaaaatccctacataaaggatagtatccacataggtttgattgaataga--tataaaagatccattatt |
98 |
Q |
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|||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| |||||||||||||||||| |
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| T |
32215934 |
aaaataatgtctcaatctcccgaagaagtcagaaaatccctacataaagggtagtatccacataggtttaattgcttagagatataaaagatccattatt |
32215835 |
T |
|
| Q |
99 |
aggagaccacttatcaagctagaaattagtaccatgaccacccccaattttccataccatgtgataatgaaaatcatcccaaatacctgcaaggctttct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32215834 |
aggagaccacttatcaagctagaaattagtaccatgaccatccccaattttccataccacgtgataatgaaaatcatcccaaatacctgcaaggctttct |
32215735 |
T |
|
| Q |
199 |
aaagaggagaattataaggttgaaagctaatgctagtaat |
238 |
Q |
| |
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|||||| |||||||||||||||||| ||||| |||||||| |
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| T |
32215734 |
aaagagaagaattataaggttgaaaactaatcctagtaat |
32215695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 18880692 - 18880564
Alignment:
| Q |
93 |
attattaggagaccacttatcaagctagaaattagtaccatgaccacccccaattttccataccatgtgataatgaaaatcatcccaaatacctg-caag |
191 |
Q |
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||||||||||||||| ||||| | | | |||||||||| | ||||| | ||||||||||| |||| ||| | ||||||||||||||| |||| ||| |
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| T |
18880692 |
attattaggagaccatttatctaaccaaaaattagtactacgaccatctccaattttccaaaccacatgacgcttaaaatcatcccaaattcctgccaaa |
18880593 |
T |
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| Q |
192 |
gctttctaaagaggagaattataaggttg |
220 |
Q |
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|||||| |||| || |||| ||||||||| |
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| T |
18880592 |
gctttccaaaggggtgaatcataaggttg |
18880564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 44144768 - 44144638
Alignment:
| Q |
88 |
gatccattattaggagaccacttatcaagctagaaattagtaccatgaccacccccaattttccataccatgtgataatgaaaatcatcccaaatacctg |
187 |
Q |
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|||||||||||||||||||| ||||| | | | || ||||||| | ||||| | ||||||||||| |||| |||| | |||||||||||| || |||| |
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| T |
44144768 |
gatccattattaggagaccatttatctaaccaaaagttagtactaagaccatctccaattttccaaaccacatgatgcttaaaatcatcccagatgcctg |
44144669 |
T |
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| Q |
188 |
c-aaggctttctaaagaggagaattataagg |
217 |
Q |
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| || |||||| |||| || |||| |||||| |
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| T |
44144668 |
ctaaagctttccaaaggggtgaatcataagg |
44144638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 24472402 - 24472312
Alignment:
| Q |
92 |
cattattaggagaccacttatcaagctagaaattagtaccatgaccacccccaattttccataccatgtgataatgaaaatcatcccaaat |
182 |
Q |
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|||||||||||||||| ||||| ||||| || ||||||| | ||||| | ||||||||||| |||| ||| | ||||||||||||||| |
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| T |
24472402 |
cattattaggagaccatttatctagctaaaagttagtactacgaccatctccaattttccaaaccacatgacgcttaaaatcatcccaaat |
24472312 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 42793535 - 42793405
Alignment:
| Q |
88 |
gatccattattaggagaccacttatcaagctagaaattagtaccatgaccacccccaattttccataccatgtgataatgaaaatcatcccaaatacctg |
187 |
Q |
| |
|
|||||||||||||||||||| ||||| | | | || ||||||| | ||||| | ||||||||||| |||| ||| | ||||||||||||||| |||| |
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| T |
42793535 |
gatccattattaggagaccatttatctaaccaaaagttagtactacgaccatctccaattttccaaaccacatgacgcttaaaatcatcccaaatgcctg |
42793436 |
T |
|
| Q |
188 |
c-aaggctttctaaagaggagaattataagg |
217 |
Q |
| |
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| || |||||| |||| || |||| |||||| |
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| T |
42793435 |
ctaaagctttccaaaggggtgaatcataagg |
42793405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 217
Target Start/End: Original strand, 54813398 - 54813528
Alignment:
| Q |
88 |
gatccattattaggagaccacttatcaagctagaaattagtaccatgaccacccccaattttccataccatgtgataatgaaaatcatcccaaatacctg |
187 |
Q |
| |
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|||||||||||||||||||| ||||| | | | || ||||||| ||||||| | ||||||||||| |||| ||| | |||||||||||| || |||| |
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| T |
54813398 |
gatccattattaggagaccatttatctaaccaaaagttagtactatgaccatctccaattttccaaaccacatgacgcttaaaatcatcccagatgcctg |
54813497 |
T |
|
| Q |
188 |
c-aaggctttctaaagaggagaattataagg |
217 |
Q |
| |
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| || |||||| |||| || |||| |||||| |
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| T |
54813498 |
ctaaagctttccaaaggggtgaatcataagg |
54813528 |
T |
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