View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_low_2 (Length: 703)
Name: NF3145_low_2
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 3 - 685
Target Start/End: Complemental strand, 23788261 - 23787580
Alignment:
| Q |
3 |
aatgcaacgattcttattccaagggatatactctgcaacattgaaatcaattttggcctacagtctaatcatacttagctatataagcagctctcaaaca |
102 |
Q |
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| T |
23788261 |
aatgcaacgattcttattccaagggatatactctgcaacattgaaatcaattttggcctacagtctaatcatacttagctatataagcagctctcaaaca |
23788162 |
T |
|
| Q |
103 |
cttagcaaagtgcacaagaaataccaagaaaaactcacatatgtttttagagaaacacatctgataagttagaaagaaatacacaagggatatacatttc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23788161 |
cttagcaaagtgcacaagaaataccaagaaaaactcacatatgtttttagagaaacacatctgataagttagaaagaaatacacaagggatatacatttc |
23788062 |
T |
|
| Q |
203 |
acatactttccattgaaatatcaaacacatgtgtaatttataaagcatttatttgtgatcgtatcattgttgtaactcctcaaaggataaggtgtaggca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23788061 |
acatactttccattgaaatatcaaacacatgtgtaatttataaagcatttatttgtgatcgtatcattgttgtaactcctcaaaggataaggtgtaggca |
23787962 |
T |
|
| Q |
303 |
cgctatttgggaagacaataagattaggttagtcaaaagtctttgtagcgagaaatctaaggtattgtttggtagacaaggatatatcttggtgtttgta |
402 |
Q |
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| T |
23787961 |
cgctatttgggaagacaataagattaggttagtcaaaagtctttgtagcgagaaatctaaggtattgtttggtagacaaggatatatcttggtgtttgta |
23787862 |
T |
|
| Q |
403 |
ataggttcagattatagtgaaagtccttcaaggatataccttattatgcttttatcaaatctcacggtttgataactagaatcaaataatcataacctat |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23787861 |
ataggttcagattatagtgaaagtccttcaaggatataacttattatgcttttgtcaaatctcacggtttgataactagaataaaataatcataacctat |
23787762 |
T |
|
| Q |
503 |
gaaatccttacttaaagatattgcttagaaacaataagatacaattataattctttgaaaatcatatcaacaaggaagaattgagttttatggaaagtca |
602 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23787761 |
gaaatccgtacttaaagatattgcttagaaacaataagataaaattagaattctttaaaaatcatatcaacaaggaagaattgagttttatggaaagtc- |
23787663 |
T |
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| Q |
603 |
gataattgaatttatttccacaattctaagattttggggtctcctcacacatgcttattgtagacaaaataaaacaaactaag |
685 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
23787662 |
tatcattgaatttatttccacaattctaagactttggggtctactcacacatgctcattgtagacaaaataaaacaaactaag |
23787580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 34725422 - 34725380
Alignment:
| Q |
14 |
tcttattccaagggatatactctgcaacattgaaatcaatttt |
56 |
Q |
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| T |
34725422 |
tcttattccaagggatatactctgcaatgttcaaatcaatttt |
34725380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 34725262 - 34725197
Alignment:
| Q |
137 |
tcacatatgtttttagagaaacacatctga-taagttagaaagaaatacacaagggatatacattt |
201 |
Q |
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| T |
34725262 |
tcacatatatttttagagaaccacatttttctaagttagaaagaaatacacatgtgatatacattt |
34725197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 34725050 - 34724986
Alignment:
| Q |
345 |
ttgtagcgagaaatctaaggtattgtttggtagacaaggatatatcttggtgtttgtaataggtt |
409 |
Q |
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| T |
34725050 |
ttgtagtgggaaatctaaggtattgttaagtagaaaaggatataccttagtgcttgtaattggtt |
34724986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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