View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_low_20 (Length: 254)
Name: NF3145_low_20
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_low_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 32216306 - 32216063
Alignment:
| Q |
13 |
aatatgaagtcatactcgagttgcatgaaagtcacgaagcacgagaagaattgtttcatctacaacatgggcaagtaggagagatcccaacacctcttct |
112 |
Q |
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| T |
32216306 |
aatatgaagccatactcgagttgcatgaaagtcacgaagcacgtgaagaattgtttcatctacaacacgggcaagtaggagagatcccaacacctcttct |
32216207 |
T |
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| Q |
113 |
actcctttgagagtta--ataaggatatgcccatgcacagccaaccaaataaatgcttgaatgcgatgcaggtctttccatttttaaaggattttatagt |
210 |
Q |
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| T |
32216206 |
actcctttgaaagttaatataaggatatgcctatgcgcagctaacgaaataaatgcttgaatgcgatgcaggtctttccatttttaaaggattttatagt |
32216107 |
T |
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| Q |
211 |
caccctccacaacaggacaattttgatgatgctaggagtacaca |
254 |
Q |
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| T |
32216106 |
caccctccacatcaggacaattttgatgctgctaggagtacaca |
32216063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 1223714 - 1223818
Alignment:
| Q |
74 |
acaacatgggcaagtaggagagatcccaacacctcttctactcctttgagagttaataaggatatgcccatgcacagccaaccaaataaatgcttgaatg |
173 |
Q |
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| T |
1223714 |
acaacatgggcaagtaggagaaatcccaacaccccatctacttcttcgcaaattagtaaggattcgcccatgaatagccaaccaaataaaagtttgaacg |
1223813 |
T |
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| Q |
174 |
cgatg |
178 |
Q |
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||||| |
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| T |
1223814 |
cgatg |
1223818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 44145165 - 44145061
Alignment:
| Q |
74 |
acaacatgggcaagtaggagagatcccaacacctcttctactcctttgagagttaataaggatatgcccatgcacagccaaccaaataaatgcttgaatg |
173 |
Q |
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| T |
44145165 |
acaacatgggcaagttggagaaatcccaacaccccatctacttcttcgcaaattagtaaggattcgtccatgaatagccaaccaaataaaagtttgaacg |
44145066 |
T |
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| Q |
174 |
cgatg |
178 |
Q |
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||||| |
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| T |
44145065 |
cgatg |
44145061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 46428002 - 46427913
Alignment:
| Q |
74 |
acaacatgggcaagtaggagagatcccaacacctcttctactcctttgagagttaataaggatatgcccatgcacagccaaccaaataaa |
163 |
Q |
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| T |
46428002 |
acaacatgggcaagtcggagaaatcccaacaccccatctacttcttcgcaaattagtaaggattcacccatgaatagccaaccaaataaa |
46427913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 54813001 - 54813042
Alignment:
| Q |
74 |
acaacatgggcaagtaggagagatcccaacacctcttctact |
115 |
Q |
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| T |
54813001 |
acaacatgggcaagtaggagaaatcccaacaccccatctact |
54813042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 42793932 - 42793828
Alignment:
| Q |
74 |
acaacatgggcaagtaggagagatcccaacacctcttctactcctttgagagttaataaggatatgcccatgcacagccaaccaaataaatgcttgaatg |
173 |
Q |
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| T |
42793932 |
acaacatgggcaagcaagggaaatcccaacacctcatctacctcttcgcaaattagtaaggattcgcccatgaatagccaaccaaataaaagtttgaacg |
42793833 |
T |
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| Q |
174 |
cgatg |
178 |
Q |
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||||| |
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| T |
42793832 |
cgatg |
42793828 |
T |
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