View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_low_3 (Length: 689)
Name: NF3145_low_3
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 6854624 - 6855059
Alignment:
| Q |
18 |
caaacaactttagaatttggcatattttttggctatagaggttcaacacctcaaaaatggtagccatagcgctgctcagcaacaatgttagcattgttgt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6854624 |
caaacaactttagaatttggcatattttttggctatagaggttcaacacctcaaaaatggtagccatagcgctgctcagcaacaatgttagcattcttgt |
6854723 |
T |
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| Q |
118 |
tctatccgacgccccatttctacatgccaaaacaaaacatatggagcttgacatattctttctcagagagattcatcagccaaaacctacttgtcaagca |
217 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6854724 |
tctatccaacgccccatt-ctacatgccaaaacaaaacatatggagcttgacatattctttctcagagagattcatcagccaaaacctacttgtcaagca |
6854822 |
T |
|
| Q |
218 |
catgccagctcttgactaa---gtggtagatgttaggaagcttgatttgaatttccaagaaagaacacctgatttaagaaatagatcgaataggagaaaa |
314 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6854823 |
cataccagctcttgactaataagtggtagatgttaggaagcttgatttgaatttccaagaaagaacacctgatttaagaaatagatcgaataggagaaaa |
6854922 |
T |
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| Q |
315 |
catcccctccaagggttcccttcgcattaggaaatactacaacgttcaaagatggttctctctatcattttcttcccttatttatacaaaattaacaaag |
414 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6854923 |
catcccctccaagggttcccttcacattaggaaatactacaacgttcaaagatggttctctctatcattttcttcccttatttatacaaaattaacaaag |
6855022 |
T |
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| Q |
415 |
gaaacaactctaatgaattttgtgcttgtactatatc |
451 |
Q |
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| T |
6855023 |
gaaacaactctaatgaattttgtgcttgtactatatc |
6855059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 504 - 688
Target Start/End: Original strand, 6855057 - 6855241
Alignment:
| Q |
504 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6855057 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
6855156 |
T |
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| Q |
604 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtg |
688 |
Q |
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| T |
6855157 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtg |
6855241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 402 - 637
Target Start/End: Complemental strand, 6823258 - 6823024
Alignment:
| Q |
402 |
aaaattaacaaaggaaacaactctaatgaattttgtgcttgtactata-tcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaa |
500 |
Q |
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|||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
6823258 |
aaaattcacaaagggaacaactctaataaattttgtgcttgtactataatcactcaaacctaaaattcctctgaaaagatatgt--ctcctttcataaaa |
6823161 |
T |
|
| Q |
501 |
ttcatcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttc |
600 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||| |
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| T |
6823160 |
ttcatcccttcaaagcttgtttttcctttctctttcggatcttcagaacattcttgactatctttttctcttcaaccaagaaagctcgaatgattctttc |
6823061 |
T |
|
| Q |
601 |
tcgaacagcaccaccagataaaacaccaccatatgca |
637 |
Q |
| |
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|| |||||| || ||| |||||| || || ||||||| |
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| T |
6823060 |
tctaacagcgcctccacataaaatactacaatatgca |
6823024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 417 - 585
Target Start/End: Complemental strand, 24245859 - 24245690
Alignment:
| Q |
417 |
aacaactctaatgaattttgtgcttgtactata-tcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaattcatcccttcaaag |
515 |
Q |
| |
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|||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| | |||||| ||| || ||| | | |||||||||| |
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| T |
24245859 |
aacagctctaataaattttgtgcttttactataatcactcaaacctaaaactcctccaaaaagatctttatctcgtttaatgaaacttaacccttcaaag |
24245760 |
T |
|
| Q |
516 |
cttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
585 |
Q |
| |
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|||| |||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||| |
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| T |
24245759 |
cttgcttttcctttgtcttttggatcttcaagactttcttgacgatcttttgctcttcaaccaagaaagc |
24245690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 6823712 - 6823549
Alignment:
| Q |
90 |
tgctcagcaacaatgttagcattgttgttctatccgacgccccatttctacatgccaaaacaaaacatatggagcttgacatattctttctcagagagat |
189 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||| | |||| |||||||| |||| |||| ||||||| || ||||||| |
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| T |
6823712 |
tgctctgcaacaatgttagcattgttgttctatcctacgaccccattctacatgtcgaaaccaaacatatagagcctgacctattcttgcttagagagag |
6823613 |
T |
|
| Q |
190 |
tcatcagccaaaacctacttgtcaagcacatgccagctcttgactaagtggtagatgttaggaa |
253 |
Q |
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| T |
6823612 |
tcatcagccgaaacataattgtcaagcacatgccagctcttgaccaactggtagaagttaggaa |
6823549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 596 - 684
Target Start/End: Complemental strand, 24245067 - 24244979
Alignment:
| Q |
596 |
ctttctcgaacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactc |
684 |
Q |
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| T |
24245067 |
ctttctctaacagcacctccagataaaactccaccataggcacgattcacagtcctcctgtttctaggtaacctagatctcttgtactc |
24244979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 585
Target Start/End: Original strand, 2418844 - 2418914
Alignment:
| Q |
515 |
gcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
585 |
Q |
| |
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||||| ||||| ||||| || |||||||||||||| ||||| ||||| ||||||| |||||| | |||||| |
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| T |
2418844 |
gcttgcttttcttttgttttctggatcttcaaaactttcttaactattttttgctcttcaacaaggaaagc |
2418914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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