View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3145_low_31 (Length: 204)

Name: NF3145_low_31

Description: NF3145

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3145_low_31

[»] chr3 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 168; E-Value: 3e-90

Query Start/End: Original strand, 15 - 193

Target Start/End: Original strand, 52488124 - 52488300

Alignment:

Q	15	agaaccatctgcatgcagacaactattctaattgaatcacagtaaaatgcaaattagaaccaaaaaatcaggttaaaatgtagtcctatgattaataata	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52488124	agaaccatctgcatgcagacaa--attctaattgaatcacagtaaaatgcaaattagaaccaaaaaatcaggttaaaatgtagtcctatgattaataata	52488221	T

Q	115	agtggaaaacctttaaaatgtttgggtcttgccatggccctttatcggatgtcatacagccaccatgatctacacaggt	193	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52488222	agtggaaaacctttaaaatgtttgggtcttgccatggccctttatcggatgtcatacagccaccatgatctacacaggt	52488300	T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 35; E-Value: 0.00000000007

Query Start/End: Original strand, 120 - 186

Target Start/End: Original strand, 7208991 - 7209057

Alignment:

Q	120	aaaacctttaaaatgtttgggtcttgccatggccctttatcggatgtcatacagccaccatgatcta	186	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|
T	7208991	aaaaccttcaaaatgtttggatcctgccatggccctttatcagacctcatacaaccaccttgatcta	7209057	T

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