View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3145_low_4 (Length: 685)

Name: NF3145_low_4
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3145_low_4
NF3145_low_4
[»] chr8 (5 HSPs)
chr8 (9-669)||(27918723-27919381)
chr8 (208-249)||(18068867-18068908)
chr8 (208-249)||(22431403-22431444)
chr8 (208-249)||(27577698-27577739)
chr8 (196-252)||(20099120-20099176)
[»] chr5 (11 HSPs)
chr5 (193-278)||(7349571-7349655)
chr5 (139-251)||(37259263-37259366)
chr5 (191-293)||(35634915-35635016)
chr5 (192-252)||(19647151-19647211)
chr5 (193-251)||(34438404-34438462)
chr5 (191-249)||(38352133-38352191)
chr5 (193-252)||(19663012-19663071)
chr5 (221-255)||(38395017-38395051)
chr5 (208-249)||(10573700-10573741)
chr5 (191-252)||(19676826-19676887)
chr5 (208-249)||(32864582-32864623)
[»] chr3 (6 HSPs)
chr3 (192-292)||(14195160-14195259)
chr3 (191-277)||(21496841-21496926)
chr3 (221-252)||(43946417-43946448)
chr3 (208-249)||(9457382-9457423)
chr3 (208-249)||(14904398-14904439)
chr3 (191-251)||(54789019-54789079)
[»] chr2 (7 HSPs)
chr2 (58-121)||(43327690-43327753)
chr2 (58-136)||(5086407-5086485)
chr2 (213-252)||(19258385-19258424)
chr2 (191-293)||(5885277-5885378)
chr2 (192-252)||(41318265-41318324)
chr2 (221-252)||(9844743-9844774)
chr2 (208-249)||(25696649-25696690)
[»] chr1 (9 HSPs)
chr1 (192-278)||(48491583-48491668)
chr1 (211-291)||(51286652-51286731)
chr1 (194-274)||(41148098-41148177)
chr1 (193-251)||(51064663-51064721)
chr1 (208-249)||(325586-325627)
chr1 (208-249)||(26356091-26356132)
chr1 (208-249)||(29592850-29592891)
chr1 (208-249)||(48185199-48185240)
chr1 (192-252)||(25537790-25537850)
[»] chr4 (14 HSPs)
chr4 (221-294)||(9816430-9816502)
chr4 (191-275)||(27599680-27599763)
chr4 (191-252)||(16401207-16401268)
chr4 (77-136)||(257199-257258)
chr4 (193-252)||(44504903-44504962)
chr4 (191-245)||(53816126-53816180)
chr4 (208-249)||(8432074-8432115)
chr4 (208-249)||(21605392-21605433)
chr4 (58-119)||(37466367-37466428)
chr4 (195-252)||(43335298-43335355)
chr4 (208-249)||(46163460-46163501)
chr4 (208-249)||(47826950-47826991)
chr4 (192-252)||(7114404-7114464)
chr4 (195-251)||(24535093-24535149)
[»] scaffold0024 (1 HSPs)
scaffold0024 (191-255)||(11772-11836)
[»] chr7 (9 HSPs)
chr7 (193-252)||(380775-380834)
chr7 (213-252)||(21626428-21626467)
chr7 (221-252)||(8363914-8363945)
chr7 (58-136)||(8362579-8362657)
chr7 (58-136)||(31419676-31419754)
chr7 (208-249)||(6471326-6471367)
chr7 (191-252)||(21452037-21452098)
chr7 (208-249)||(35012009-35012050)
chr7 (213-249)||(21357134-21357170)
[»] chr6 (7 HSPs)
chr6 (192-252)||(14113902-14113962)
chr6 (221-252)||(26092763-26092794)
chr6 (193-248)||(31709567-31709622)
chr6 (194-252)||(27156394-27156452)
chr6 (211-252)||(6059752-6059793)
chr6 (58-119)||(14200738-14200799)
chr6 (191-252)||(32398467-32398528)


Alignment Details
Target: chr8 (Bit Score: 565; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 9 - 669
Target Start/End: Complemental strand, 27919381 - 27918723
Alignment:
Q  9 gataatacttcaaatggatgtgaaaaatgtcttttaaatggtgaactataacaagttcgtgagaatccaagaattagagaaaatgagcatcgttcttcaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27919381 gataatacttcaaatggatgtgaaaaatgtcttttaaatggtgaactataacaagttcgtgagaatccaagaattagagaaaatgagcatcgttcttcaa 27919282  T
Q  109 aagttaatagaattaacacggatgacatatactttatgtattatgtagtttacattttttatgaccgactgatcgactttaaggtttattacaatttaat 208  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27919281 aggttaatagaattaacacggatgacatatactttatgtattatgtagtttacattttttatgaccgactgatcgactttaaggtttattacaatttaat 27919182  T
Q  209 cgtgttgtatagaatatgatttatatattttagtttattttgattgcaagtcatctcaaacttttttgtcggcctccaccactgcttactggtatcattg 308  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||  |||||||||||||| |||| ||||||||    
T  27919181 cgtgttgtatagaatatgatttatatattttaatttattttgatcgcaagtcatctcaaatttttttgtctacctccaccactgctgactgatatcattg 27919082  T
Q  309 ttcatgtatgcctgagtacaaaacttcaatttacaacaaatagctaaagaaagcattgaatgacatcattttgtttgttttcctataatgtacttgaatt 408  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27919081 ttcatgtatgcctgaatacaaaacttcaatgtacaacaaatagctaaagaaagcattgaatgacatcattttgtttgttttcctataatgtacttgaatt 27918982  T
Q  409 tatttcctgtttccatgtcccatgatggtcaaggctgctacccgttacataaccaagggtattggatgattttgtataagtagtatattctgatctttgt 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27918981 tatttcctgtttccatgtcccatgatggtcaaggctgctacccgttacattaccaagggtattggatgattttgtataagtagtatattctgatctttgt 27918882  T
Q  509 tcaatacctaacttttgtcttgatcacctaatttctacaacaaaaacaacaatataccaaaaattgttggtcgattttcacatctttcatttcattgatc 608  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||    
T  27918881 tcaatacctaacttttgtcttgatcacttaatttctacaacaaaaacaacagtataccaaaaaattttggtcgattttcacat-tttcatttcattgatc 27918783  T
Q  609 cttttctacaaaacttcctctttttatcttaaatgattatgataacgaattatgatgaatt 669  Q
    ||||||||||||| |||||| ||||||||||||||||| | ||||| |||| |||||||||    
T  27918782 cttttctacaaaatttcctc-ttttatcttaaatgattctaataacaaattgtgatgaatt 27918723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 18068867 - 18068908
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  18068867 tcgtattgtatattatatgatttatatattttagtttatttt 18068908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 22431444 - 22431403
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  22431444 tcgtattgtatattatatgatttatatattttagtttatttt 22431403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 27577698 - 27577739
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  27577698 tcgtattgtatattatatgatttatatattttagtttatttt 27577739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 20099120 - 20099176
Alignment:
Q  196 attacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    ||||||| ||||  || ||||||  ||||||| ||||||||||||||||||||||||    
T  20099120 attacaacttaaatgtattgtatgcaatatgaattatatattttagtttattttgat 20099176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 7349571 - 7349655
Alignment:
Q  193 tttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgattgcaagtcatctcaaacttttttgtc 278  Q
    |||||||||| ||||  |||||||||| |||||||||||||||||||||||||||||||| ||  ||||||  |||||||||||||    
T  7349571 tttattacaagttaaatgtgttgtatacaatatgatttatatattttagtttattttgatggc-ggtcatcctaaacttttttgtc 7349655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 37259263 - 37259366
Alignment:
Q  139 actttatgtattatgtagtttacattttttatgaccgactgatcgactttaaggtttattacaatttaatcgtgttgtatagaatatgatttatatattt 238  Q
    ||||||||||||| ||||||||||||||        || |||||||||||  |||||||||||| ||||   ||||||||  ||||||||||||||||||    
T  37259263 actttatgtattacgtagtttacatttt--------gaatgatcgactttt-ggtttattacaacttaaatatgttgtatgcaatatgatttatatattt 37259353  T
Q  239 tagtttattttga 251  Q
    |||||||||||||    
T  37259354 tagtttattttga 37259366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 35635016 - 35634915
Alignment:
Q  191 ggtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgattgcaagtcatctcaaacttttttgtcggcctccaccac 290  Q
    |||||||||||| ||||  ||||| |||  ||||||||||||||||||||||||||||| ||||| || || | ||||| |||||||| | |||| ||||    
T  35635016 ggtttattacaacttaaatgtgttatatgcaatatgatttatatattttagtttattttaattgc-agccaccccaaacctttttgtctgactccgccac 35634918  T
Q  291 tgc 293  Q
    |||    
T  35634917 tgc 35634915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 19647151 - 19647211
Alignment:
Q  192 gtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    ||||||||||| ||||  |||||||||  ||||| ||||||||||||||||||||||||||    
T  19647151 gtttattacaacttaaatgtgttgtatgcaatataatttatatattttagtttattttgat 19647211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 34438462 - 34438404
Alignment:
Q  193 tttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttga 251  Q
    |||||||||| ||||   ||||||||  |||||||||||||||||||||||||||||||    
T  34438462 tttattacaacttaaatttgttgtatgcaatatgatttatatattttagtttattttga 34438404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 38352133 - 38352191
Alignment:
Q  191 ggtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||||||||||| ||||  |||||||||  ||||||||| |||||||||||||||||||    
T  38352133 ggtttattacaacttaaatgtgttgtatgcaatatgattcatatattttagtttatttt 38352191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 19663071 - 19663012
Alignment:
Q  193 tttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    |||||||||| ||||  |||||||||| |||||   ||||||||||||||||||||||||    
T  19663071 tttattacaacttaaatgtgttgtatacaatatagattatatattttagtttattttgat 19663012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 38395051 - 38395017
Alignment:
Q  221 aatatgatttatatattttagtttattttgattgc 255  Q
    ||||||||||||||||||||||||||||| |||||    
T  38395051 aatatgatttatatattttagtttattttaattgc 38395017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 10573700 - 10573741
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  10573700 tcgtattgtatattatatgatttatatattttagtttatttt 10573741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 19676887 - 19676826
Alignment:
Q  191 ggtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    |||||||||||| ||||  ||||||||   ||||| | ||||||||||||||||||||||||    
T  19676887 ggtttattacaacttaaatgtgttgtacgcaatataaattatatattttagtttattttgat 19676826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 32864582 - 32864623
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  32864582 tcgtattgtatattatatgatttatatattttagtttatttt 32864623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 14195259 - 14195160
Alignment:
Q  192 gtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgattgcaagtcatctcaaacttttttgtcggcctccaccact 291  Q
    ||||||||||| ||||  | |||||||  |||||||||||||||||||||||||||||||| || ||||| | |||||||||||||| | |||| |||||    
T  14195259 gtttattacaacttaaatgagttgtatgcaatatgatttatatattttagtttattttgatggc-agtcaccccaaacttttttgtctgactccgccact 14195161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 191 - 277
Target Start/End: Original strand, 21496841 - 21496926
Alignment:
Q  191 ggtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgattgcaagtcatctcaaacttttttgt 277  Q
    ||||||||| || ||||  |||||||||  |||||||||||||||||||||||||||||||| || || |||| |||||||||||||    
T  21496841 ggtttattaaaacttaaatgtgttgtatgcaatatgatttatatattttagtttattttgatggc-agacatcccaaacttttttgt 21496926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 43946417 - 43946448
Alignment:
Q  221 aatatgatttatatattttagtttattttgat 252  Q
    ||||||||||||||||||||||||||||||||    
T  43946417 aatatgatttatatattttagtttattttgat 43946448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 9457382 - 9457423
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  9457382 tcgtattgtatattatatgatttatatattttagtttatttt 9457423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 14904398 - 14904439
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  14904398 tcgtattgtatattatatgatttatatattttagtttatttt 14904439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 54789019 - 54789079
Alignment:
Q  191 ggtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttga 251  Q
    |||||||||||| ||||   |||| |||  |||||| ||||||||||||||||||||||||    
T  54789019 ggtttattacaacttaaatatgttatattcaatatggtttatatattttagtttattttga 54789079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 43327690 - 43327753
Alignment:
Q  58 aacaagttcgtgagaatccaagaattagagaaaatgagcatcgttcttcaaaagttaatagaat 121  Q
    |||||||| |||||||||||||||||  ||||||||||| |||||||||||| |||||||||||    
T  43327690 aacaagtttgtgagaatccaagaattgaagaaaatgagcctcgttcttcaaaggttaatagaat 43327753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 5086407 - 5086485
Alignment:
Q  58 aacaagttcgtgagaatccaagaattagagaaaatgagcatcgttcttcaaaagttaatagaattaacacggatgacat 136  Q
    |||||||| |||||||||||||||||  ||||||||||| |||| |||||||  |||||||| ||||| |||| |||||    
T  5086407 aacaagtttgtgagaatccaagaattgaagaaaatgagcctcgtccttcaaagtttaatagagttaacccggaagacat 5086485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 19258424 - 19258385
Alignment:
Q  213 ttgtatagaatatgatttatatattttagtttattttgat 252  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  19258424 ttgtatacaatatgatttatatattttagtttattttgat 19258385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 5885378 - 5885277
Alignment:
Q  191 ggtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgattgcaagtcatctcaaacttttttgtcggcctccaccac 290  Q
    |||||||||||| ||||  |||||||||  ||||||||| |||| ||||||||||||||||| || || || | |||||| ||||||| | |||| ||||    
T  5885378 ggtttattacaacttaaatgtgttgtatgcaatatgattcatatgttttagtttattttgatagc-agccaccccaaactcttttgtctgactccgccac 5885280  T
Q  291 tgc 293  Q
    |||    
T  5885279 tgc 5885277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 41318265 - 41318324
Alignment:
Q  192 gtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    ||||||||||| ||||  ||||| |||  ||||||||||||||||||||||||||||||||    
T  41318265 gtttattacaacttaaatgtgtt-tatgcaatatgatttatatattttagtttattttgat 41318324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 252
Target Start/End: Complemental strand, 9844774 - 9844743
Alignment:
Q  221 aatatgatttatatattttagtttattttgat 252  Q
    ||||||||||||||||||||||||||||||||    
T  9844774 aatatgatttatatattttagtttattttgat 9844743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 25696690 - 25696649
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  25696690 tcgtattgtatattatatgatttatatattttagtttatttt 25696649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 48491668 - 48491583
Alignment:
Q  192 gtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgattgcaagtcatctcaaacttttttgtc 278  Q
    ||||||||||| ||||  |||||||| | |||||||||||||||||||||||||||||||| ||  | |||| ||||||||||||||    
T  48491668 gtttattacaacttaagtgtgttgtaaacaatatgatttatatattttagtttattttgatggc-ggccatcccaaacttttttgtc 48491583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 51286652 - 51286731
Alignment:
Q  211 tgttgtatagaatatgatttatatattttagtttattttgattgcaagtcatctcaaacttttttgtcggcctccaccact 291  Q
    ||||||||| ||||||||||||||||||||||||||||| || ||  | |||| |||||||||||||| | |||| |||||    
T  51286652 tgttgtatacaatatgatttatatattttagtttattttcatggc-ggccatcccaaacttttttgtctgactccgccact 51286731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 41148177 - 41148098
Alignment:
Q  194 ttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgattgcaagtcatctcaaacttttt 274  Q
    ||||||||| |||| ||||||||||| ||  || |||||||||||| |||||||||||| |||| ||| |||||| |||||    
T  41148177 ttattacaacttaaacgtgttgtatacaaagtggtttatatatttttgtttattttgatagcaa-tcacctcaaatttttt 41148098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 51064721 - 51064663
Alignment:
Q  193 tttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttga 251  Q
    |||||||||| ||||  || ||||||  ||||| |||||||||||||||||||||||||    
T  51064721 tttattacaacttaaatgtattgtatgcaatataatttatatattttagtttattttga 51064663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 325586 - 325627
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  325586 tcgtattgtatattatatgatttatatattttagtttatttt 325627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 26356091 - 26356132
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  26356091 tcgtattgtatattatatgatttatatattttagtttatttt 26356132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 29592891 - 29592850
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  29592891 tcgtattgtatattatatgatttatatattttagtttatttt 29592850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 48185199 - 48185240
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  48185199 tcgtattgtatattatatgatttatatattttagtttatttt 48185240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 25537790 - 25537850
Alignment:
Q  192 gtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    ||||||||||| ||||  || || |||| ||||| |||||||||||||| |||||||||||    
T  25537790 gtttattacaacttaaatgttttatatacaatataatttatatattttaatttattttgat 25537850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 9816430 - 9816502
Alignment:
Q  221 aatatgatttatatattttagtttattttgattgcaagtcatctcaaacttttttgtcggcctccaccactgct 294  Q
    |||||||||||||||||||||||||||||||| ||  |||| | |||||||||||||| | |||| ||||||||    
T  9816430 aatatgatttatatattttagtttattttgatggc-ggtcaccccaaacttttttgtctggctccgccactgct 9816502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 27599680 - 27599763
Alignment:
Q  191 ggtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgattgcaagtcatctcaaactttttt 275  Q
    |||||||||||| ||||  || ||||||  |||||||||||| ||||||||||||||||||| || ||||| |||||| ||||||    
T  27599680 ggtttattacaacttaaatgtattgtatgcaatatgatttatttattttagtttattttgatggc-agtcacctcaaattttttt 27599763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 16401207 - 16401268
Alignment:
Q  191 ggtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    |||||||||||| ||||  |||||||||  |||||||||||||||||| | |||||||||||    
T  16401207 ggtttattacaacttaaatgtgttgtatgcaatatgatttatatatttaactttattttgat 16401268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 257258 - 257199
Alignment:
Q  77 aagaattagagaaaatgagcatcgttcttcaaaagttaatagaattaacacggatgacat 136  Q
    ||||||| |||||||||||  |||| ||||||| ||||||||| ||||| ||||||||||    
T  257258 aagaattggagaaaatgagtgtcgtccttcaaaggttaatagagttaacccggatgacat 257199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 44504903 - 44504962
Alignment:
Q  193 tttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    |||||||| | ||||  |||||||||  |||||||||||||||||||| |||||||||||    
T  44504903 tttattacgacttaaatgtgttgtatgtaatatgatttatatattttaatttattttgat 44504962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 53816180 - 53816126
Alignment:
Q  191 ggtttattacaatttaatcgtgttgtatagaatatgatttatatattttagttta 245  Q
    ||||||||| |||||||   ||||||||  |||||||||||||||||||||||||    
T  53816180 ggtttattaaaatttaaatatgttgtatgaaatatgatttatatattttagttta 53816126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 8432115 - 8432074
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  8432115 tcgtattgtatattatatgatttatatattttagtttatttt 8432074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 21605392 - 21605433
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  21605392 tcgtattgtatattatatgatttatatattttagtttatttt 21605433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 37466428 - 37466367
Alignment:
Q  58 aacaagttcgtgagaatccaagaattagagaaaatgagcatcgttcttcaaaagttaataga 119  Q
    ||||||||| ||||||||||||||||  ||||||||||  |||| |||||||  ||||||||    
T  37466428 aacaagttcatgagaatccaagaattgaagaaaatgagtctcgtccttcaaagattaataga 37466367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 43335355 - 43335298
Alignment:
Q  195 tattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    |||||||| ||||  |||||||||  ||||||||| ||||||||||||||| ||||||    
T  43335355 tattacaacttaaatgtgttgtatgcaatatgattcatatattttagtttactttgat 43335298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 46163501 - 46163460
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  46163501 tcgtattgtatattatatgatttatatattttagtttatttt 46163460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 47826950 - 47826991
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  47826950 tcgtattgtatattatatgatttatatattttagtttatttt 47826991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 7114404 - 7114464
Alignment:
Q  192 gtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    ||||||||||| ||||  || ||||||  ||||| ||||||||||||||||| ||||||||    
T  7114404 gtttattacaacttaaatgtattgtatgcaatataatttatatattttagttcattttgat 7114464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 24535149 - 24535093
Alignment:
Q  195 tattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttga 251  Q
    |||||||| ||||  ||||| |||  ||||| |||||||||||||||||||||||||    
T  24535149 tattacaacttaaatgtgttatatgtaatataatttatatattttagtttattttga 24535093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 11836 - 11772
Alignment:
Q  191 ggtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgattgc 255  Q
    |||||||||||| ||||  ||||| |||  ||||||||||||||||||||||||||||| |||||    
T  11836 ggtttattacaacttaaatgtgttatatgcaatatgatttatatattttagtttattttaattgc 11772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 380775 - 380834
Alignment:
Q  193 tttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    |||||||||| ||||   ||||||||  ||||||||||||||||||||||||||||||||    
T  380775 tttattacaacttaaatttgttgtatgcaatatgatttatatattttagtttattttgat 380834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 21626428 - 21626467
Alignment:
Q  213 ttgtatagaatatgatttatatattttagtttattttgat 252  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  21626428 ttgtatataatatgatttatatattttagtttattttgat 21626467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 8363914 - 8363945
Alignment:
Q  221 aatatgatttatatattttagtttattttgat 252  Q
    ||||||||||||||||||||||||||||||||    
T  8363914 aatatgatttatatattttagtttattttgat 8363945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 8362579 - 8362657
Alignment:
Q  58 aacaagttcgtgagaatccaagaattagagaaaatgagcatcgttcttcaaaagttaatagaattaacacggatgacat 136  Q
    ||||||||| ||||||||||| ||||  ||||||||||  |||| ||| ||| ||||||||| ||||  ||||||||||    
T  8362579 aacaagttcatgagaatccaataattgaagaaaatgagtctcgtcctttaaaggttaatagagttaatccggatgacat 8362657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 31419676 - 31419754
Alignment:
Q  58 aacaagttcgtgagaatccaagaattagagaaaatgagcatcgttcttcaaaagttaatagaattaacacggatgacat 136  Q
    ||||||||| ||||||||||||||| | ||||||||||  |||| |||||||  |||||||| || |  ||||||||||    
T  31419676 aacaagttcatgagaatccaagaatcaaagaaaatgagtctcgtccttcaaagattaatagagttgatccggatgacat 31419754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 6471367 - 6471326
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  6471367 tcgtattgtatattatatgatttatatattttagtttatttt 6471326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 21452098 - 21452037
Alignment:
Q  191 ggtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    |||||||||| | ||||  ||||||| |  ||||||||||||||||| ||||||||||||||    
T  21452098 ggtttattacgacttaaatgtgttgtgtttaatatgatttatatattatagtttattttgat 21452037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 35012050 - 35012009
Alignment:
Q  208 tcgtgttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  35012050 tcgtattgtatattatatgatttatatattttagtttatttt 35012009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 21357170 - 21357134
Alignment:
Q  213 ttgtatagaatatgatttatatattttagtttatttt 249  Q
    |||||||  ||||||||||||||||||||||||||||    
T  21357170 ttgtatattatatgatttatatattttagtttatttt 21357134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 14113962 - 14113902
Alignment:
Q  192 gtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    ||||||||| | ||||  ||||| |||  ||||||||||||||||||||||||||||||||    
T  14113962 gtttattactacttaaatgtgttctatgcaatatgatttatatattttagtttattttgat 14113902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 26092763 - 26092794
Alignment:
Q  221 aatatgatttatatattttagtttattttgat 252  Q
    ||||||||||||||||||||||||||||||||    
T  26092763 aatatgatttatatattttagtttattttgat 26092794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 31709622 - 31709567
Alignment:
Q  193 tttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattt 248  Q
    |||||||||| ||||   ||||||||  ||||||||||||||||||||||||||||    
T  31709622 tttattacaacttaaatttgttgtatgcaatatgatttatatattttagtttattt 31709567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 27156452 - 27156394
Alignment:
Q  194 ttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    ||||||||| ||||  |||| ||||  |||||||||||||||||||| |||||||||||    
T  27156452 ttattacaacttaaatgtgtagtatgcaatatgatttatatattttaatttattttgat 27156394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 6059793 - 6059752
Alignment:
Q  211 tgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    |||| |||| |||||||||||||||||||| |||||||||||    
T  6059793 tgttatatacaatatgatttatatattttaatttattttgat 6059752  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 14200799 - 14200738
Alignment:
Q  58 aacaagttcgtgagaatccaagaattagagaaaatgagcatcgttcttcaaaagttaataga 119  Q
    |||||||| |||||||||||||||||  ||||||||||| || | |||||||  ||||||||    
T  14200799 aacaagtttgtgagaatccaagaattgaagaaaatgagcctcatccttcaaagattaataga 14200738  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 32398467 - 32398528
Alignment:
Q  191 ggtttattacaatttaatcgtgttgtatagaatatgatttatatattttagtttattttgat 252  Q
    |||||||||| | ||||  ||||||| |  ||||||||||||||||| ||||||||||||||    
T  32398467 ggtttattacgacttaaatgtgttgtgtttaatatgatttatatattatagtttattttgat 32398528  T

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