View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_low_5 (Length: 501)
Name: NF3145_low_5
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 20 - 493
Target Start/End: Original strand, 11641853 - 11642326
Alignment:
| Q |
20 |
aatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcac |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11641853 |
aatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcac |
11641952 |
T |
|
| Q |
120 |
ataatatacttaaacagaataagaccatattcaaacttaggtctctgctaatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatg |
219 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11641953 |
ataatgtacttaaacagaataagaccatattcaaacttaggtctctgctaatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatg |
11642052 |
T |
|
| Q |
220 |
ctcctccactggtgttaagttgctcaatgtactagacttgcaggatgcacctttggaggattttcctgctgaaattgttaacctttaccttctgaagcat |
319 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| ||| |
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| T |
11642053 |
ctcctccactggtgttaagttgctcaatgtactagacttgcaggatgcacctttggaggattttcctcttgaaattatcaacctttaccttctgaaacat |
11642152 |
T |
|
| Q |
320 |
ctaagtttgaagaatacaaaggtgaaaaacattccaagttcaattaagaagctccaatacttggaaacattggatcttaaacacacttgtgtcacggaat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11642153 |
ctaagtttgaagaatacaaaggtgaaaaacattccaagttcaattaagaagctccaatacttggaaacattggatcttaaacacacttgtgtcatggaat |
11642252 |
T |
|
| Q |
420 |
taccttttgaaattgcggagctgaaacggttacgccacctcctggtgtatcgctacaagattgagtcctatgct |
493 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11642253 |
taccttttgaaattgcggagctgaaacggttacgccacctcctggtgtatcgctacaagattgagtcctatgct |
11642326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 20 - 493
Target Start/End: Original strand, 11623347 - 11623820
Alignment:
| Q |
20 |
aatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
11623347 |
aatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcagtcataaattcgtcac |
11623446 |
T |
|
| Q |
120 |
ataatatacttaaacagaataagaccatattcaaacttaggtctctgctaatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatg |
219 |
Q |
| |
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||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11623447 |
ataatgtacataaacagaacaagaccatattcaaacttaggtctctgctaatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatg |
11623546 |
T |
|
| Q |
220 |
ctcctccactggtgttaagttgctcaatgtactagacttgcaggatgcacctttggaggattttcctgctgaaattgttaacctttaccttctgaagcat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
11623547 |
ctcctccactggtgttaagttgctcaatgtactagacttgcaggatgcacctttggaggattttcctgttgaaattgtaaacctttaccttctgaagcat |
11623646 |
T |
|
| Q |
320 |
ctaagtttgaagaatacaaaggtgaaaaacattccaagttcaattaagaagctccaatacttggaaacattggatcttaaacacacttgtgtcacggaat |
419 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
11623647 |
ctaagtttgaaaaatacaaaggtgaaaagcattccaggttcaattaagaagctgaaatacttggaaacattggatcttaagcacacttatgtcacggaat |
11623746 |
T |
|
| Q |
420 |
taccttttgaaattgcggagctgaaacggttacgccacctcctggtgtatcgctacaagattgagtcctatgct |
493 |
Q |
| |
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| ||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||||||| |
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|
| T |
11623747 |
tgcctgttgaagttgcggagctgaaacggttacgccatctcctggtgtatcgctatgaaattgaatcctatgct |
11623820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 26 - 494
Target Start/End: Complemental strand, 11604096 - 11603628
Alignment:
| Q |
26 |
aagtcaagggatcagaactttgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcacataata |
125 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||| |||||||||||||||||| | || |||||| |
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|
| T |
11604096 |
aagtcaagagatcagaactttgcaacaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtttatcggtcataaatccttcgcataatg |
11603997 |
T |
|
| Q |
126 |
tacttaaacagaataagaccatattcaaacttaggtctctgctaatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatgctcctc |
225 |
Q |
| |
|
|| | |||| |||| ||| | ||| | |||||||||||||||||||||| | ||||||||| | ||||||| |||||| | ||||||||||||||||| |
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|
| T |
11603996 |
tattacaacaaaatacgactacatttcatcttaggtctctgctaatgtttggattatcagatttactcaatcagttttctcttcatgaattatgctcctc |
11603897 |
T |
|
| Q |
226 |
cactggtgttaagttgctcaatgtactagacttgcaggatgcacctttggaggattttcctgctgaaattgttaacctttaccttctgaagcatctaagt |
325 |
Q |
| |
|
|| ||||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |
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|
| T |
11603896 |
caatggtgttcaatttctcaatgtactagacttgcaggatgcacctttggatgattttcctgctgaaattgtcaacctttaccttctgaagtatctaagt |
11603797 |
T |
|
| Q |
326 |
ttgaagaatacaaaggtgaaaaacattccaagttcaattaagaagctccaatacttggaaacattggatcttaaacacacttgtgtcacggaattacctt |
425 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||| ||| ||| || | || |||||||||||||| ||||| | ||| || ||| | ||| |
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|
| T |
11603796 |
ttgaagaatacaaaggtgaaaaatattccaggttccattaagaggctgcaaaaccttgagacattggatcttaagcacacgtctgtaactgaactgcctg |
11603697 |
T |
|
| Q |
426 |
ttgaaattgcggagctgaaacggttacgccacctcctggtgtatcgctacaagattgagtcctatgcta |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||| || ||||||| |
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|
| T |
11603696 |
ttgaaattgcggagctgaaacggttacgccatctcctcgtgtatcgttacgagattgaatcttatgcta |
11603628 |
T |
|
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