View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_low_7 (Length: 467)
Name: NF3145_low_7
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 154 - 426
Target Start/End: Original strand, 12669523 - 12669795
Alignment:
| Q |
154 |
tagaaccaatttgcacattacaatttgcaaggtccnnnnnnnncatccaattttcaagccattaatggcgaaaatggaactagctcaggagggatagaca |
253 |
Q |
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| T |
12669523 |
tagaaccaatttgcacattacaatttgcaaggtccttttttttcatccaattttcaagccattaatggcgaaaatggaactagctcaggagggatagaca |
12669622 |
T |
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| Q |
254 |
agaaaagagagaatgagttgggtggtaaaagggaaaaacggagacgaaactctatatcgacaaatttcgatatagcgtcttccacaaaagcaaaaacaaa |
353 |
Q |
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| T |
12669623 |
agaaaagagagaatgagttgggtggtaaaagggaaaaacggagacgaaactctatatcaacaaatttcgatatagcgtcttccacaaaagcaaaaacaaa |
12669722 |
T |
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| Q |
354 |
gaaaaccgacacagagtgaggtcttacaaggtcaagaaaaggtcttacaaggtcaagaagacacaagtagagt |
426 |
Q |
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| T |
12669723 |
gaaaaccgacacagagtgaggtcttacaaggtcaagaaaaggtcttacaaggtcaagaagacacaagtagagt |
12669795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 12669370 - 12669475
Alignment:
| Q |
1 |
gaattgcttgataacacacatgcacttaagaaaattttgtttaaattttattgtgaaggatattaaggacgtgatgaaagcatgctagctacaattacta |
100 |
Q |
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| T |
12669370 |
gaattgcttgataacatacatgcacttaagaaaattttatttaaattttattgtgaaggatattaaggacatgatgaaagcatgctagctacaattacta |
12669469 |
T |
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| Q |
101 |
catttc |
106 |
Q |
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| T |
12669470 |
catttc |
12669475 |
T |
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