View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_low_8 (Length: 445)
Name: NF3145_low_8
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 430
Target Start/End: Original strand, 24941572 - 24941991
Alignment:
| Q |
9 |
aatgagaattgtgatgatcaattgtgaagtgccaagtatctaccgttgttaacgcttatatggtcgtgctcatgttatcataacagaccaaatttggnnn |
108 |
Q |
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| T |
24941572 |
aatgagaattgtgatgatcaattgtgaagtgccaagtatctaccgttgttaacgcttatatggtcgtgctcatgttatcataacagaccaaatttggttt |
24941671 |
T |
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| Q |
109 |
nnnngccaggacaatgtagttctagaagtaattttctaatccaacatgattcagacactaaattaagtactccacgatattcatcctacgtgccagaccg |
208 |
Q |
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| T |
24941672 |
ttttgcccggacaatgtagttctaaaagtaattttctattccaacatgattcagacactaaattaagtactccacgatattcgtcctacgtgccagaccg |
24941771 |
T |
|
| Q |
209 |
agataaggtgtgatgccttttcgcaaactacgagatcaaattatgattaggtataaacaataaccaaaaatagaccttctgatgtctggacatccacccc |
308 |
Q |
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| T |
24941772 |
agataaggtgtgatgccttttcgcaaactacgagatcaaattatgattaggtataaacaataacc--aaatagaccttttgatgtctggacatccacccc |
24941869 |
T |
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| Q |
309 |
agtctgaatcattctaaaagataaacttattgatggaggaaggatacatgtgcaggctgggatcaataatgccctgaatatagtgaatgatgcgcttcaa |
408 |
Q |
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| T |
24941870 |
agtctgaatcattgtaaaagataagcttattgatggaggaaggatacacgtgaaggctgggatcaataatgccctgaatatagtgaatgacgcgcttcaa |
24941969 |
T |
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| Q |
409 |
tgccgacatatgttgtattttt |
430 |
Q |
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| T |
24941970 |
tgccgacatatgttgtgttttt |
24941991 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 5417078 - 5417135
Alignment:
| Q |
116 |
aggacaatgtagttctagaagtaattttctaatccaacatgattcagacactaaatta |
173 |
Q |
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|||||||||||||||| |||| | ||||||||||||||||||||| |||||| |||| |
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| T |
5417078 |
aggacaatgtagttctgaaagttagtttctaatccaacatgattcaaacactacatta |
5417135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 875534 - 875584
Alignment:
| Q |
123 |
tgtagttctagaagtaattttctaatccaacatgattcagacactaaatta |
173 |
Q |
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|||||||||| ||||| |||| ||||||||||||||||||||||| |||| |
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| T |
875534 |
tgtagttctaaaagtagatttcaaatccaacatgattcagacactacatta |
875584 |
T |
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