View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3145_low_9 (Length: 439)
Name: NF3145_low_9
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_low_9 |
 | |
|
| [»] scaffold0581 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0581 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 6779 - 6368
Alignment:
| Q |
18 |
gaaagaagatgaatgcatgtttcttaatcaaatttctagatacctctattcatgaaaaaattcaagaataaagatccctataattcacggacgaaaatag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6779 |
gaaagaagatgaatgcatgtttcttaatcaaatttctagatacctctattcatgaaaaaattcaagaataaagatccctataattcacggacgaaaatag |
6680 |
T |
|
| Q |
118 |
ataagtgttatttacatgaacttttgaccggataaatactcaatatagaatgctaacatcgcataaatagatcattgattaattgggactatttggacta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6679 |
ataagtgttatttacatgaacttttgaccggataaatactcaatatagaatgctaacatcgcataaatagatcattgattaattgggactatttggacta |
6580 |
T |
|
| Q |
218 |
acttatttgagcttacctcaaacacaatcacttgtaaactatttggtagataaattggtttcttgtgtggaactttagaacacatcagctatatttcaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6579 |
acttatttgagcttacctcaaacacaatcacttgtaaactatttggtagataaattggtttcttgtgtggaactttagaacacatcagctatatttcaat |
6480 |
T |
|
| Q |
318 |
ttcttaactatgatgataaattggttgatggtttatgaggaaggagaggtgaaagaagctaaaaagttgtgacttatgatgatgaatggttttgttatct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6479 |
ttcttaactatgatgataaattggttgatggtttatgaggaaggagaggtgaaagaagctaaaaagttgtgacttatgatgatgaatggttttgttatct |
6380 |
T |
|
| Q |
418 |
gatggttctgtg |
429 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6379 |
gatggttctgtg |
6368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 273 - 428
Target Start/End: Complemental strand, 37312385 - 37312230
Alignment:
| Q |
273 |
tggtttcttgtgtggaactttagaacacatcagctatatttcaatttcttaactatgatgataaattggttgatggtttatgaggaaggagaggtgaaag |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37312385 |
tggtttcttgtgtggaactttagaacacatcagctatatttcaatttcttaactatgatgataaattggttgatggtttatgaggaaggagaggtgaaag |
37312286 |
T |
|
| Q |
373 |
aagctaaaaagttgtgacttatgatgatgaatggttttgttatctgatggttctgt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37312285 |
aagctaaaaagttgtgacttatgatgatgaatggttttgttatctgatggttctgt |
37312230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 23160898 - 23160757
Alignment:
| Q |
127 |
atttacatgaacttttgaccggataaatactcaatatagaatgctaacatcgcataaatagatcattgattaattgggactatttggactaacttatttg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23160898 |
atttacatgaacttttgaccggataaatactcaatatagaatgctaacatcgcataaatagatcattgattaattgggactatttggactaacttatttg |
23160799 |
T |
|
| Q |
227 |
agcttacctcaaacacaatcacttgtaaactatttggtagat |
268 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
23160798 |
agcttacctcaaacacagtcacttgtaaactatttgggagat |
23160757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 331 - 428
Target Start/End: Original strand, 30406107 - 30406204
Alignment:
| Q |
331 |
tgataaattggttgatggtttatgaggaaggagaggtgaaagaagctaaaaagttgtgacttatgatgatgaatggttttgttatctgatggttctgt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30406107 |
tgataaattggttgatggtttatgaggaaggagaggtgaaagaagctaaaaagttgtgacttatgatgatgaatggttttgttatctgatggttctgt |
30406204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 30406008 - 30406092
Alignment:
| Q |
18 |
gaaagaagatgaatgcatgtttcttaatcaaatttctagatacctctattcatgaaaaaattcaagaataaagatccctataatt |
102 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30406008 |
gaaagaacatgaatgcatgtttcttaatcaaatttctagatacctctattcatgaaaaaattcaagaataaagatccctataatt |
30406092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 23161282 - 23161209
Alignment:
| Q |
18 |
gaaagaagatgaatgcatgtttcttaatcaaatttctagatacctctattcatgaaaaaattcaagaataaaga |
91 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23161282 |
gaaagaacatgaatacatgtttcttaatcaaatttctagatacctctattcatgaaaaaattcaagaataaaga |
23161209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 23161144 - 23161100
Alignment:
| Q |
86 |
taaagatccctataattcacggacgaaaatagataagtgttattt |
130 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
23161144 |
taaagatccgcataattcacggacgaaaatagatatgtgttattt |
23161100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 54759481 - 54759394
Alignment:
| Q |
18 |
gaaagaagatgaatgcatgtttcttaatcaaatttctagatacctctattcatgaaaaaattcaagaataaagatccctataattcac |
105 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54759481 |
gaaagaacatgactgcatgtttcttaatcaaatttctagatacctctattcatgaaaaaattcaagaataaagatccctataattcac |
54759394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University