View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3146_high_12 (Length: 344)
Name: NF3146_high_12
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3146_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 25 - 331
Target Start/End: Original strand, 6116889 - 6117190
Alignment:
| Q |
25 |
ctaactccatatacttgttattcttaattgatttaattaaaaatgtatagtggactagttgttcaaattgaggtcatgtcttattttctctcgccagttg |
124 |
Q |
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| T |
6116889 |
ctaactccatatacttgttattcataattgatttaattaaaaatgtatagtggact-----ttcaaattgaggtcatgtcttattttctctcgccagttg |
6116983 |
T |
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| Q |
125 |
tgtttcaaacttgttaagcattatggtgtttttggaaaaacatcagattctcatgatctaagatagtcttagcagaagatccagatcattcatttgaaaa |
224 |
Q |
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| T |
6116984 |
tgtttcaaacttgttaagcattatggtgtttttggaaaagcatcagattctcatgatctaagatagtcttagcagaagatccagatcattcatttgaaaa |
6117083 |
T |
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| Q |
225 |
gaatgtatgtttatcaatgaaaatatattctacgttttgtaggaattacggtgtgtttatcaatgattttgtcaacataataattctgattaatttattt |
324 |
Q |
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| T |
6117084 |
gaatgtatgtttatcaatgaaaatatattctacgttgtgtaggaattacggtgtgtttatcaatgattttgtgaacataataattctgattaattttttt |
6117183 |
T |
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| Q |
325 |
gatgatg |
331 |
Q |
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| T |
6117184 |
gatgatg |
6117190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 6122404 - 6122313
Alignment:
| Q |
154 |
ttttggaaaaacatcagattctcatgatctaagatagtcttagcagaagatccagatcattcatttgaaaagaatgta-tgtttatcaatga |
244 |
Q |
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| T |
6122404 |
ttttgcaaaaacatcagattttcatgatgtaggatagtcttatcataaaatccagatcattcatacgagaagaatgtattttttatcaatga |
6122313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 13752902 - 13752957
Alignment:
| Q |
218 |
ttgaaaagaatgtatgtttatcaatgaaaatatattctacgttttgtaggaattac |
273 |
Q |
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| T |
13752902 |
ttgaaaaaaatgtatgtttatcaatcaaaatacattcaaccttttgtaggaattac |
13752957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 13752825 - 13752872
Alignment:
| Q |
131 |
aaacttgttaagcattatggtgtttttggaaaaacatcagattctcat |
178 |
Q |
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| T |
13752825 |
aaacatgttaagctttatggtgtttttgcaaaaacatcagattttcat |
13752872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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