View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3146_high_13 (Length: 319)

Name: NF3146_high_13
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3146_high_13
NF3146_high_13
[»] chr3 (1 HSPs)
chr3 (10-306)||(6179688-6179984)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 6179688 - 6179984
Alignment:
Q  10 acaaaggggacaattttgagttggaaccttcctctgttccaaaacatagtattgaatcatatagaagagaggtagagtgcagagtcgtttcatctcaagg 109  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| ||||    
T  6179688 acaaaaggggcaattttgagttggaaccttcctctattccaaaacatagtattgaatcatatagaagagagatggagtgcagagtcatttcatcttaagg 6179787  T
Q  110 catcgttagggggatgttggttcctcggcctccgacacatgaatgattgccatgtataccacctatgctttattcgtttttgtccagagaaaggggttcc 209  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6179788 catcgttagggagatgttggttcctcggcctccgacacatggatgtttgccatgtataccacctatgctttattcgtttttgtccagagaaaggggttcc 6179887  T
Q  210 tacacccacacctcatagggcatggatgtttcagggtcttcacttgaccattcagcttgaggagtttccccttaggtaaaagtaaagggttagttat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6179888 tacacccacacctcatagggcatggatgtttcagggtcttcacttgaccattcagcttgaggagtttccccttaggtaaaagtaaagggttagttat 6179984  T

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