View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3146_high_15 (Length: 249)

Name: NF3146_high_15
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3146_high_15
NF3146_high_15
[»] chr1 (4 HSPs)
chr1 (18-217)||(16127302-16127498)
chr1 (45-182)||(16138847-16138984)
chr1 (55-164)||(33732161-33732270)
chr1 (61-121)||(51044474-51044534)
[»] chr5 (3 HSPs)
chr5 (58-144)||(1281333-1281419)
chr5 (58-140)||(1319303-1319385)
chr5 (61-121)||(2590849-2590909)
[»] chr4 (2 HSPs)
chr4 (57-121)||(43560540-43560604)
chr4 (44-119)||(52071734-52071809)
[»] chr3 (3 HSPs)
chr3 (57-121)||(34626692-34626756)
chr3 (58-128)||(33695348-33695418)
chr3 (56-122)||(44674037-44674103)
[»] chr8 (7 HSPs)
chr8 (58-108)||(5960394-5960444)
chr8 (58-108)||(5843126-5843176)
chr8 (58-108)||(5849868-5849918)
chr8 (58-108)||(5921237-5921287)
chr8 (58-108)||(5949129-5949179)
chr8 (58-108)||(5984657-5984707)
chr8 (57-125)||(39916636-39916704)
[»] chr7 (1 HSPs)
chr7 (61-120)||(45676073-45676132)
[»] chr2 (1 HSPs)
chr2 (58-108)||(42789007-42789057)
[»] scaffold0008 (1 HSPs)
scaffold0008 (61-122)||(237151-237212)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 16127498 - 16127302
Alignment:
Q  18 agttttggcttctctacttgtcaattatgcaggtttattaagatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagaga 117  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16127498 agttttggcttctct---tgtcaattatgcaggtttattaagatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagaga 16127402  T
Q  118 ggaaatttttcaaatgaagaagaggaaattatcattaagatgcatgagttgctagggaacaggtacatatgttcatttgcttccttttttaaatcaaagt 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16127401 ggaaatttttcaaatgaagaagagcaaattatcattaagatgcatgagttgctagggaacaggtacatatgttcatttgcttcctttttcaaatcaaagt 16127302  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 182
Target Start/End: Complemental strand, 16138984 - 16138847
Alignment:
Q  45 tgcaggtttattaagatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaaatttttcaaatgaagaagaggaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  16138984 tgcaggtttattaagatgtggaaagagttgtagattgagatggattaactatttaaaacctgatattaagagaggaaattttacaaatgaagaagaggaa 16138885  T
Q  145 attatcattaagatgcatgagttgctagggaacaggta 182  Q
    | |||||| ||||||||||| |  || |||||||||||    
T  16138884 actatcatcaagatgcatgaatcactggggaacaggta 16138847  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 33732270 - 33732161
Alignment:
Q  55 ttaagatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaaatttttcaaatgaagaagaggaaattatcatta 154  Q
    ||||| |||||||| || || ||| | || |||||||| ||||| ||| | ||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  33732270 ttaaggtgtggaaaaagctgcagacttaggtggattaactatttgagaccagatattaagagaggaaatttcacaaatgaagaagaggaaaatatcatta 33732171  T
Q  155 agatgcatga 164  Q
    || |||||||    
T  33732170 agctgcatga 33732161  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 51044474 - 51044534
Alignment:
Q  61 tgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaa 121  Q
    ||||||||||| ||||||||||||||||| || ||||| ||  ||||| | ||||||||||    
T  51044474 tgtggaaagagctgtagattgagatggataaactatttgaggcctgatttgaagagaggaa 51044534  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 1281333 - 1281419
Alignment:
Q  58 agatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaaatttttcaaatgaagaagaggaa 144  Q
    |||||||||||||||||||| || |||||||  |||||||||||  |||||||||| ||||| || |||||  ||||||||||||||    
T  1281333 agatgtggaaagagttgtaggttaagatggacaaattatttaagtcctgatattaaaagagggaaattttctgatgaagaagaggaa 1281419  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 1319385 - 1319303
Alignment:
Q  58 agatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaaatttttcaaatgaagaaga 140  Q
    ||||||||||||||||||||| | ||||||| ||||||| ||||  |||||||||  |||||||| || ||  ||||||||||    
T  1319385 agatgtggaaagagttgtagacttagatggaataattatctaaggcctgatattagaagaggaaaattctctgatgaagaaga 1319303  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 2590849 - 2590909
Alignment:
Q  61 tgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaa 121  Q
    ||||| ||||||||||| ||||||||||| |||||||||||  |||||||||  |||||||    
T  2590849 tgtggtaagagttgtaggttgagatggataaattatttaaggcctgatattagaagaggaa 2590909  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 43560604 - 43560540
Alignment:
Q  57 aagatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaa 121  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||  ||||| | ||||||||||    
T  43560604 aagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaa 43560540  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 52071809 - 52071734
Alignment:
Q  44 atgcaggtttattaagatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagagg 119  Q
    |||||||||||  |||||||||||| ||||||||| | |||||| | |||||| ||||| | ||||||||||||||    
T  52071809 atgcaggtttaagaagatgtggaaaaagttgtagacttagatggttgaattatctaagaccagatattaagagagg 52071734  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 34626756 - 34626692
Alignment:
Q  57 aagatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaa 121  Q
    ||||||||||||||||||||||||||||||||| || ||| | ||| ||||| | ||||||||||    
T  34626756 aagatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaagagaggaa 34626692  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 33695348 - 33695418
Alignment:
Q  58 agatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaaatttttc 128  Q
    ||||||||||||||||||||  | || ||||  |||||||||||  ||||||||||||||||||| |||||    
T  33695348 agatgtggaaagagttgtaggctaaggtggaccaattatttaaggcctgatattaagagaggaaaattttc 33695418  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 44674037 - 44674103
Alignment:
Q  56 taagatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaaa 122  Q
    |||||||||| |||||||| |||||||||||||| |||||  ||||| ||||| | |||||||||||    
T  44674037 taagatgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagaggaaa 44674103  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 5960444 - 5960394
Alignment:
Q  58 agatgtggaaagagttgtagattgagatggattaattatttaagaactgat 108  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||| |||||    
T  5960444 agatgtggaaagagttgtagattaagatggataaattatctaagacctgat 5960394  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 5843176 - 5843126
Alignment:
Q  58 agatgtggaaagagttgtagattgagatggattaattatttaagaactgat 108  Q
    ||||||||||| ||||||||||| |||||||| |||||| ||||| |||||    
T  5843176 agatgtggaaaaagttgtagattaagatggataaattatctaagacctgat 5843126  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 5849918 - 5849868
Alignment:
Q  58 agatgtggaaagagttgtagattgagatggattaattatttaagaactgat 108  Q
    ||||||||||| ||||||||||| |||||||| |||||| ||||| |||||    
T  5849918 agatgtggaaaaagttgtagattaagatggataaattatctaagacctgat 5849868  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 5921287 - 5921237
Alignment:
Q  58 agatgtggaaagagttgtagattgagatggattaattatttaagaactgat 108  Q
    ||||||||||||||||| ||||| |||||||| |||||| ||||| |||||    
T  5921287 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 5921237  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 5949179 - 5949129
Alignment:
Q  58 agatgtggaaagagttgtagattgagatggattaattatttaagaactgat 108  Q
    ||||||||||||||||| ||||| |||||||| |||||| ||||| |||||    
T  5949179 agatgtggaaagagttgaagattaagatggataaattatctaagacctgat 5949129  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 5984707 - 5984657
Alignment:
Q  58 agatgtggaaagagttgtagattgagatggattaattatttaagaactgat 108  Q
    ||||||||||||||||| ||||| |||||||| |||||| ||||| |||||    
T  5984707 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 5984657  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 39916636 - 39916704
Alignment:
Q  57 aagatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaaattt 125  Q
    |||||||||||| || || |||||||||||||| |||||| | ||| ||||| ||||| | ||||||||    
T  39916636 aagatgtggaaaaagctgcagattgagatggatcaattatctcagacctgatcttaagcgtggaaattt 39916704  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 45676132 - 45676073
Alignment:
Q  61 tgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagagga 120  Q
    ||||| ||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||    
T  45676132 tgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagagga 45676073  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 42789057 - 42789007
Alignment:
Q  58 agatgtggaaagagttgtagattgagatggattaattatttaagaactgat 108  Q
    ||||||||||| ||||| || ||||||||||| |||||||||||| |||||    
T  42789057 agatgtggaaaaagttgcaggttgagatggataaattatttaagacctgat 42789007  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 237212 - 237151
Alignment:
Q  61 tgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaaa 122  Q
    ||||| ||||||||||||||||| ||| | |||||||||||| || |||| || ||||||||    
T  237212 tgtgggaagagttgtagattgaggtggctgaattatttaagacctaatatcaaaagaggaaa 237151  T

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