View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3146_high_19 (Length: 238)

Name: NF3146_high_19
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3146_high_19
NF3146_high_19
[»] chr2 (7 HSPs)
chr2 (50-158)||(17364372-17364479)
chr2 (48-136)||(20376334-20376422)
chr2 (54-128)||(21690863-21690936)
chr2 (50-128)||(17840538-17840615)
chr2 (66-128)||(25867858-25867919)
chr2 (50-128)||(40584706-40584783)
chr2 (80-128)||(30948053-30948101)
[»] chr1 (7 HSPs)
chr1 (50-150)||(51111004-51111103)
chr1 (50-150)||(24549934-24550033)
chr1 (50-127)||(4649693-4649769)
chr1 (50-150)||(14911063-14911162)
chr1 (59-128)||(12301253-12301322)
chr1 (62-128)||(25124176-25124241)
chr1 (50-106)||(951047-951103)
[»] chr4 (3 HSPs)
chr4 (54-155)||(17870871-17870971)
chr4 (50-148)||(13959667-13959763)
chr4 (62-111)||(11426539-11426587)
[»] scaffold0259 (1 HSPs)
scaffold0259 (50-158)||(20086-20193)
[»] chr6 (5 HSPs)
chr6 (50-146)||(32669348-32669443)
chr6 (68-150)||(12464805-12464885)
chr6 (63-128)||(10374144-10374208)
chr6 (62-128)||(2944755-2944820)
chr6 (60-128)||(31136034-31136103)
[»] chr5 (2 HSPs)
chr5 (50-146)||(15117485-15117580)
chr5 (54-150)||(14053302-14053397)
[»] chr8 (8 HSPs)
chr8 (54-119)||(1444845-1444909)
chr8 (52-128)||(16207793-16207868)
chr8 (62-128)||(14424313-14424380)
chr8 (49-128)||(28847833-28847911)
chr8 (50-128)||(38801626-38801703)
chr8 (60-112)||(32343280-32343332)
chr8 (60-112)||(32355767-32355819)
chr8 (60-112)||(32359886-32359938)
[»] chr7 (4 HSPs)
chr7 (62-128)||(6628581-6628646)
chr7 (62-128)||(5299849-5299914)
chr7 (50-126)||(10259515-10259590)
chr7 (68-128)||(11917728-11917787)
[»] chr3 (5 HSPs)
chr3 (50-92)||(23432511-23432553)
chr3 (54-128)||(10081704-10081777)
chr3 (54-128)||(10188629-10188702)
chr3 (62-128)||(35510971-35511036)
chr3 (54-128)||(8146932-8147007)
[»] scaffold0533 (1 HSPs)
scaffold0533 (50-128)||(2457-2534)
[»] scaffold0062 (1 HSPs)
scaffold0062 (54-106)||(1500-1552)
[»] scaffold0072 (1 HSPs)
scaffold0072 (61-113)||(19258-19309)


Alignment Details
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 17364372 - 17364479
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaatataggcaacacatatctacaa 149  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| ||| |||||||| |||| ||    
T  17364372 aaggcacgctatgatgtagtaccaacatgtttaagacatcttgtctaacatcttcctagaactattgttttaaaaaaatgtagccaacacatgtcta-aa 17364470  T
Q  150 aacccaaca 158  Q
    |||||||||    
T  17364471 aacccaaca 17364479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 20376422 - 20376334
Alignment:
Q  48 ttaaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaatataggcaa 136  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |||||||    
T  20376422 ttaaggcatgctatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttactagaacaattgttttaacaaaatgtaggcaa 20376334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 21690936 - 21690863
Alignment:
Q  54 cacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    |||| |||||||| ||||||||||||  ||||||||| ||| ||||||||||||||||  |||||| ||||||||    
T  21690936 cacgctatgatgttgtaccaacatgtc-aagacatctagtccaacatcttgctagaacacttgttttaacaaaat 21690863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 17840615 - 17840538
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    |||||||| || ||||||||||||||||| | || ||||||| |  ||||||||||||||||  |||||| ||||||||    
T  17840615 aaggcacgctacgatgtcgtaccaacatg-tcaaaacatcttattcaacatcttgctagaacacttgttttaacaaaat 17840538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 25867858 - 25867919
Alignment:
Q  66 tcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    ||||||||||||||  ||||||||||||| |||||||||| |||||  |||||| ||||||||    
T  25867858 tcgtaccaacatgta-aagacatcttgtccaacatcttgccagaacacttgttttaacaaaat 25867919  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 40584783 - 40584706
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    |||||||| ||  |||||||||| ||||||  ||||||||||||| ||||||||||||||||  |||||| || |||||    
T  40584783 aaggcacgctacaatgtcgtacctacatgtc-aagacatcttgtccaacatcttgctagaacatttgttttaaaaaaat 40584706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 30948053 - 30948101
Alignment:
Q  80 ttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    |||||||||| ||||| |||||||||||| |||| ||||| ||||||||    
T  30948053 ttaagacatcatgtctgacatcttgctaggactaatgttttaacaaaat 30948101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 51111004 - 51111103
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaatataggcaacacatatctacaa 149  Q
    |||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| |||||||| ||  |||||||| |||||||    
T  51111004 aaggcacgctatgatgtcgtaccaacaggtt-aagacatcttgtctgacatcttgctagaactattgttttaacaaaatgtaaccaacacatgtctacaa 51111102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 24549934 - 24550033
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaatataggcaacacatatctacaa 149  Q
    |||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||| ||| |||  ||| |||||||    
T  24549934 aaggcacgctatgatgtcgtaccaaaatgtt-aagacatcttgtctgacatcttgctagaactattgttttaacaaaatgtagccaatgcatgtctacaa 24550032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 4649769 - 4649693
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaa 127  Q
    |||| ||||||||||| |||||||||||||  ||||||||||||| |||||||| |||||||  |||||| |||||||    
T  4649769 aaggtacgttatgatgccgtaccaacatgtc-aagacatcttgtccaacatcttactagaacacttgttttaacaaaa 4649693  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 14911162 - 14911063
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaatataggcaacacatatctacaa 149  Q
    |||||||| | |||||||||||||||||||  ||||||| |  ||  |||||||||||||||| |||||| ||||||||  || |||||||  |||||||    
T  14911162 aaggcacgatgtgatgtcgtaccaacatgtc-aagacatttgttccgacatcttgctagaactcttgttttaacaaaatgcagccaacacaagtctacaa 14911064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 12301322 - 12301253
Alignment:
Q  59 tatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaac-tattgtttaaacaaaat 128  Q
    |||||||||||||  ||||||  ||||||||| ||| |||||||||||||||| |||||||| ||||||||    
T  12301322 tatgatgtcgtactcacatgtc-aagacatctggtccaacatcttgctagaacatattgttttaacaaaat 12301253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 25124176 - 25124241
Alignment:
Q  62 gatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    ||||||||||||| ||||  ||||||||||||| ||||||||| ||||||  |||||| ||||||||    
T  25124176 gatgtcgtaccaatatgtc-aagacatcttgtccaacatcttgttagaacatttgttttaacaaaat 25124241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 951103 - 951047
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgct 106  Q
    |||||||| ||||| ||||||||||| ||||||| ||||  ||||| ||||||||||    
T  951103 aaggcacgctatgacgtcgtaccaacttgtttaaaacattgtgtctgacatcttgct 951047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 17870971 - 17870871
Alignment:
Q  54 cacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaatataggcaacacatatctacaaaacc 153  Q
    |||| |||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||||| |||||||| ||| |||||||| |||||||| ||    
T  17870971 cacgctatgatgtcgtaccaacatgtt-aagacatcttgtctgacatcttcctagaattattgttttaacaaaatgtagccaacacatgtctacaaaccc 17870873  T
Q  154 ca 155  Q
    ||    
T  17870872 ca 17870871  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 13959667 - 13959763
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaatataggcaacacatatctaca 148  Q
    |||||||| |||||| |||||||||||| || |||||||||||||| ||||||||||||| ||||||||| |||||||| ||| |||||||| ||||||    
T  13959667 aaggcacgctatgat-tcgtaccaacatatt-aagacatcttgtctgacatcttgctagagctattgttttaacaaaatgtagtcaacacatgtctaca 13959763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 11426587 - 11426539
Alignment:
Q  62 gatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaac 111  Q
    ||||||||||||||||||  | ||||||||||| ||||||||||||||||    
T  11426587 gatgtcgtaccaacatgtcga-gacatcttgtccaacatcttgctagaac 11426539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 20193 - 20086
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaatataggcaacacatatctacaa 149  Q
    |||||||| | ||||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||| | || ||| ||| |||||||| |||||||    
T  20193 aaggcacgctgtgatgtcataccaacatgtt-aagacatcttgtctgacatcttgctggaactattgttttagcataatgtagccaacacatgtctacaa 20095  T
Q  150 aacccaaca 158  Q
    |||||||||    
T  20094 aacccaaca 20086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 32669348 - 32669443
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaatataggcaacacatatcta 146  Q
    |||||||| |||||||||| ||||||||||| |||| ||||||||| ||| ||||||||||||||||||| |||||||||||| |||||||| ||||    
T  32669348 aaggcacgctatgatgtcgcaccaacatgtt-aagatatcttgtctgacaccttgctagaactattgttttaacaaaatatagccaacacatgtcta 32669443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 12464805 - 12464885
Alignment:
Q  68 gtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaatataggcaacacatatctacaaa 150  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||    
T  12464805 gtaccaacatgttaaa-acatcttgtctgacatcttgctagaactattgttt-aacaaaatgtagccaacacatgtctacaaa 12464885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 10374208 - 10374144
Alignment:
Q  63 atgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||||||   ||||| ||||||||    
T  10374208 atgtcgtaccaacatgtt-aggacatcttgtccaacatcttgctagaacacctgttttaacaaaat 10374144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 2944755 - 2944820
Alignment:
Q  62 gatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    |||||| |||||||||||  |||||||||||||||| |||||| ||||||  |||||| ||||||||    
T  2944755 gatgtcttaccaacatgtc-aagacatcttgtctaatatcttgttagaacacttgttttaacaaaat 2944820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 31136103 - 31136034
Alignment:
Q  60 atgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaac-tattgtttaaacaaaat 128  Q
    |||||||||||| ||||||| || || |||| ||| |||||||||||||||| | |||||| ||||||||    
T  31136103 atgatgtcgtactaacatgtctaggaaatctggtccaacatcttgctagaacatcttgttttaacaaaat 31136034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 15117485 - 15117580
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaatataggcaacacatatcta 146  Q
    |||||||  ||||||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||||| ||||    
T  15117485 aaggcacactatgatgtcataccaatatgtt-aagacatcttgtctgacatcttgctagaactattgttttaacaaaatgtagccaacacatgtcta 15117580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 14053302 - 14053397
Alignment:
Q  54 cacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaatataggcaacacatatctacaaa 150  Q
    |||| |||||||||||||||||||||  |||||||||| ||  | |||||||||||| | |||||||||||||||  || |||||||  ||||||||    
T  14053302 cacgctatgatgtcgtaccaacatgtc-aagacatcttatccgatatcttgctagaatttttgtttaaacaaaatgcagccaacacaagtctacaaa 14053397  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 1444845 - 1444909
Alignment:
Q  54 cacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgttt 119  Q
    |||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||| |||||    
T  1444845 cacgttatgatgtcgtaccaacgtgtt-aagacatcgtgtctgacatcttgctagaactaatgttt 1444909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 16207868 - 16207793
Alignment:
Q  52 ggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    |||||| |||||| | | ||||||||||| |||||||||||||| | ||||| ||||||||||||||| ||||||||    
T  16207868 ggcacgctatgatattgcaccaacatgtt-aagacatcttgtctgaaatctttctagaactattgttttaacaaaat 16207793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 14424313 - 14424380
Alignment:
Q  62 gatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaac-tattgtttaaacaaaat 128  Q
    |||||||||| |||||||||| ||||||| ||| |||||||||||| ||| | |||||| ||||||||    
T  14424313 gatgtcgtactaacatgtttaggacatctggtccaacatcttgctataacatcttgttttaacaaaat 14424380  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 28847911 - 28847833
Alignment:
Q  49 taaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    ||||||||| |||||||| ||||||||||| | |||||  ||||||  |||||||||||||||| |||||| || |||||    
T  28847911 taaggcacgctatgatgttgtaccaacatg-tcaagaccacttgtccgacatcttgctagaactcttgttttaagaaaat 28847833  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 38801703 - 38801626
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    |||||||| || ||||| ||||||||||||  ||||||||||| | ||||| ||||||||||  |||||| ||||||||    
T  38801703 aaggcacgctacgatgttgtaccaacatgtc-aagacatcttgacaaacattttgctagaacacttgttttaacaaaat 38801626  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 32343280 - 32343332
Alignment:
Q  60 atgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaact 112  Q
    ||||||||||||  ||||||| | ||||||||||| ||||||||| |||||||    
T  32343280 atgatgtcgtactcacatgttcatgacatcttgtccaacatcttgttagaact 32343332  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 32355767 - 32355819
Alignment:
Q  60 atgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaact 112  Q
    ||||||||||||  ||||||| | ||||||||||| ||||||||| |||||||    
T  32355767 atgatgtcgtactcacatgttcatgacatcttgtccaacatcttgttagaact 32355819  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 32359886 - 32359938
Alignment:
Q  60 atgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaact 112  Q
    ||||||||||||  ||||||| | ||||||||||| ||||||||| |||||||    
T  32359886 atgatgtcgtactcacatgttcatgacatcttgtccaacatcttgttagaact 32359938  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 6628646 - 6628581
Alignment:
Q  62 gatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||  || ||| ||||||||    
T  6628646 gatgtcgtaccaacatgtt-aagacatcttgtccaacatcttgctagaacacttattttaacaaaat 6628581  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 5299849 - 5299914
Alignment:
Q  62 gatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    |||||| |||||||||||  ||||||||||||| ||||||||||||||||  |||||| || |||||    
T  5299849 gatgtcttaccaacatgtc-aagacatcttgtccaacatcttgctagaacacttgttttaagaaaat 5299914  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 10259590 - 10259515
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaa 126  Q
    |||| ||| |||||||||||||||||||| |||||||||  | ||| |||||||| |||||||| | ||| ||||||    
T  10259590 aaggtacgctatgatgtcgtaccaacatg-ttaagacattatatctgacatcttggtagaactaatattttaacaaa 10259515  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 11917787 - 11917728
Alignment:
Q  68 gtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    ||||||||||||  |||||||| |||| |||||||||||||||  ||||||| ||||||||    
T  11917787 gtaccaacatgtc-aagacatcctgtccaacatcttgctagaataattgttttaacaaaat 11917728  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 23432553 - 23432511
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttg 92  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  23432553 aaggcacgctatgatgtcgtaccaacatgtttaagacatcttg 23432511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 10081777 - 10081704
Alignment:
Q  54 cacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    |||| |||||||||| ||||||||||  |||||||||||||  |||||||| ||||||| |||||| ||||||||    
T  10081777 cacgctatgatgtcgcaccaacatgtc-aagacatcttgtccgacatcttgttagaactcttgttttaacaaaat 10081704  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 10188702 - 10188629
Alignment:
Q  54 cacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    |||| |||||||||| ||||||||||  |||||||||||||  |||||||| ||||||| |||||| ||||||||    
T  10188702 cacgctatgatgtcgcaccaacatgtc-aagacatcttgtccgacatcttgttagaactcttgttttaacaaaat 10188629  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 35510971 - 35511036
Alignment:
Q  62 gatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||| |||  |||||| ||||||||    
T  35510971 gatgtcgtaccaacatgtc-aagacatcttgtccaacatcttgctaaaacacttgttttaacaaaat 35511036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 8147007 - 8146932
Alignment:
Q  54 cacgttatgatgtcgtaccaacatgtttaagacatcttgtcta--acatcttgctagaactattgtttaaacaaaat 128  Q
    |||| |||||| ||||||||||||||  |||||||| |||||   ||||||||||||||||| ||||| ||||||||    
T  8147007 cacgctatgatatcgtaccaacatgtc-aagacatcgtgtctgtgacatcttgctagaactaatgttttaacaaaat 8146932  T

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Target: scaffold0533 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 2457 - 2534
Alignment:
Q  50 aaggcacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaactattgtttaaacaaaat 128  Q
    |||||||||| ||||||| |||||||||||  |||| ||||| ||| |||||||||||||||  |||||| ||||||||    
T  2457 aaggcacgttgtgatgtcataccaacatgtc-aagatatcttatctgacatcttgctagaacacttgttttaacaaaat 2534  T

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Target: scaffold0062 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 1552 - 1500
Alignment:
Q  54 cacgttatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgct 106  Q
    |||| |||| |||||||||||||||||||||||||  |||||||||| |||||    
T  1552 cacgctatgttgtcgtaccaacatgtttaagacattgtgtctaacatattgct 1500  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 19258 - 19309
Alignment:
Q  61 tgatgtcgtaccaacatgtttaagacatcttgtctaacatcttgctagaacta 113  Q
    |||||||||||||||||| |||||||||  ||||| ||||||||||| |||||    
T  19258 tgatgtcgtaccaacatg-ttaagacattatgtctgacatcttgctataacta 19309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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