View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3146_high_7 (Length: 403)
Name: NF3146_high_7
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3146_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 388
Target Start/End: Original strand, 12031181 - 12031559
Alignment:
| Q |
14 |
tactcggccgctcgctactaaacaaaaactttcattttatcgaaattgtgaatctggacataacaaaatgttcatagacacatatccgcacggacaaaat |
113 |
Q |
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| T |
12031181 |
tactcggccgctcgctactaaacaaaaactttcattttatcgaaattgtgaatctcgacataacaaaatgttcatagacacatatccgcacggacaagat |
12031280 |
T |
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| Q |
114 |
ttagacataa----ttttagattatacttctaaactcatgtcgaggacggagaaagagtcgaatagtgtacctaagtagaccttgacagcttgcatataa |
209 |
Q |
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| T |
12031281 |
ttagacgtacgtatttttagattatacttctaaactcatgtcgaggacggagaaagagtcgaagagtgtacctaagtagaccttgacagcttgcatataa |
12031380 |
T |
|
| Q |
210 |
gaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagtgaaaacagaaatacatgaaaagatcaatatacttg |
309 |
Q |
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| T |
12031381 |
gaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagtgaaaacagaaatacatgaaaagatcaatatacttg |
12031480 |
T |
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| Q |
310 |
caataccagctatccatcctaattgtgcaatggcatatgctagggccaacactcctgcaccaattaccaccgttattat |
388 |
Q |
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| T |
12031481 |
caataccagctatccatcctaattgtgcaatggcatatgctagggccaacactcctgcaccaattaccaccgttattat |
12031559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 178 - 385
Target Start/End: Complemental strand, 241628 - 241421
Alignment:
| Q |
178 |
tacctaagtagaccttgacagcttgcatataagaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagtgaa |
277 |
Q |
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| T |
241628 |
tacctaagtagctcttgacagcttgcatgtaagtataatttctcttgccagtaactgggtctggatacctatagcaatcagctacaagactgtaagtgaa |
241529 |
T |
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| Q |
278 |
aacagaaatacatgaaaagatcaatatacttgcaataccagctatccatcctaattgtgcaatggcatatgctagggccaacactcctgcaccaattacc |
377 |
Q |
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| T |
241528 |
agcagagatgcatgcaaagattattatactggctataccagctatccatcctagttgagccatggcccatgctagagccaacacccctgccccaactacc |
241429 |
T |
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| Q |
378 |
accgttat |
385 |
Q |
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| T |
241428 |
actgttat |
241421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 178 - 385
Target Start/End: Original strand, 223533 - 223740
Alignment:
| Q |
178 |
tacctaagtagaccttgacagcttgcatataagaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagtgaa |
277 |
Q |
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||||||||||| ||||||||||||||| |||| ||||||||| || ||| | | ||| |||||| |||||||||||||||| ||||||||||||||||| |
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| T |
223533 |
tacctaagtagctcttgacagcttgcatgtaagtataatttcttttaccagtgattgggtctggaaacctatagcaatcagctacaagactgtaagtgaa |
223632 |
T |
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| Q |
278 |
aacagaaatacatgaaaagatcaatatacttgcaataccagctatccatcctaattgtgcaatggcatatgctagggccaacactcctgcaccaattacc |
377 |
Q |
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| T |
223633 |
aatagagatggatgcaaaggttagtatactggctataccagctatccatcctagttgagccatagcccatgctagagccaacacccctgccccaactacc |
223732 |
T |
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| Q |
378 |
accgttat |
385 |
Q |
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| T |
223733 |
actgttat |
223740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 388
Target Start/End: Complemental strand, 51528634 - 51528447
Alignment:
| Q |
201 |
tgcatataagaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagtgaaaacagaaatacatgaaaagatca |
300 |
Q |
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|||||||||| || ||||||||||||||||||| |||||||| ||||| |||||||| | |||| |||||||| ||| ||||| ||||||| | | |
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| T |
51528634 |
tgcatataagtgtagtttctcttgccattaactgagtctggatatctataacaatcagctataagattgtaagtgtaaatggaaatggatgaaaatgtga |
51528535 |
T |
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| Q |
301 |
atatacttgcaataccagctatccatcctaattgtgcaatggcatatgctagggccaacactcctgcaccaattaccaccgttattat |
388 |
Q |
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||| || |||||||||||||||| ||| | ||| || ||||||| ||||||||||||||||| | ||||| |||||||| |
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| T |
51528534 |
tcataacaagtatgccagctatccatcctagttgagaaattgcccatgctagagccaacactcctgcacccaccaccactgttattat |
51528447 |
T |
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