View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3146_low_11 (Length: 351)
Name: NF3146_low_11
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3146_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 113 - 291
Target Start/End: Original strand, 47988637 - 47988815
Alignment:
| Q |
113 |
ataatttttcacaatttcacatattgtagctttcgtttcgttgtagagaaaagaaaaagaaaaccctaacgcacagaatcaaggtattctattcttctat |
212 |
Q |
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| T |
47988637 |
ataatttttcacaatttcacatattgtagctttcgtttcgttgtagagaaaagaaaaagaaaaccctaacgcacagaatcaaggtattctattcttctat |
47988736 |
T |
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| Q |
213 |
tcctcttctctttctgattaagatttcgattattaggattttgcgttctctcaattagtttatcgttggatcataattg |
291 |
Q |
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| T |
47988737 |
tcctcttctctttctgattaagatttcgattattagggttttgtgttctctcaattagtttatcgttggatcataattg |
47988815 |
T |
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Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 47988082 - 47988183
Alignment:
| Q |
13 |
aatatcagtccacgtgtcacgatataattggatgatcttgcgttgacatgacgcgatctcaaataatttttcactataaaaatcgaaaacccctaaccca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47988082 |
aatatcagtccacgtgtcacgatataattggatgatcttgagttgacatgacgcgatctcaaataatttttcactat-aaaatcgaaaacccctaaccca |
47988180 |
T |
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| Q |
113 |
ata |
115 |
Q |
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||| |
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| T |
47988181 |
ata |
47988183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 35112486 - 35112259
Alignment:
| Q |
13 |
aatatcagtccacgtgtcacgatataattggatgatcttgcgttgacatgacgcgatctcaaataatttttcactataaaaatcgaaaa-cccctaaccc |
111 |
Q |
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| T |
35112486 |
aatatcagtccacgtgtgacaatataattggtagagcttgcatttactaaacgtaatctcaaataatttttcactataaaacacgaaaaacccctagcct |
35112387 |
T |
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| Q |
112 |
aataatttttcacaatttcacatattgtagctttcgtttcgttgtagagaaaagaaaaagaaaaccctaacgcacagaatcaaggtattctattcttcta |
211 |
Q |
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|||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| || ||||||| |
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| T |
35112386 |
aataat----cacaattacacaaattgtagctttcgtttcgttgaagagaaaagaaaaagaaaacccttacgcacataatcaagg-----taatcttcta |
35112296 |
T |
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| Q |
212 |
ttcctcttctctttctgattaagatttcgattattag |
248 |
Q |
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|||||||||| ||| ||||||||||||||| ||||| |
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| T |
35112295 |
ttcctcttcttttttcgattaagatttcgataattag |
35112259 |
T |
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