View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3146_low_15 (Length: 264)
Name: NF3146_low_15
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3146_low_15 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 36312780 - 36313043
Alignment:
| Q |
1 |
aggtgatttatcagcctttgttacaacagctaatgtcctcaaaccagttttatcaaccatctgtgacatcctaatagactcacaagtactaaaatcaaca |
100 |
Q |
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| T |
36312780 |
aggtgatttatcagcctttgttacaacagctaatgtcctcaaaccagttttatcaaccatctgtgacatcctaatagactcacaagtactaaaatcaaca |
36312879 |
T |
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| Q |
101 |
gtagcagaaagaacattcaggataatgctctcttcaggagttatatagtccatgataatatccttaatctgatcataaatgttatcaggttgaccatgaa |
200 |
Q |
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| T |
36312880 |
gtagcagaaagaacattcaggataatgctctcttcaggagttatatagtccatgataatatccttaatctgatcataaatgttatcaggttgaccatgaa |
36312979 |
T |
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| Q |
201 |
caggaacacgagttatacctggaagatcaaccattgtaaggtcaggaacgccattcttcttcac |
264 |
Q |
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| T |
36312980 |
caggaacacgagttatacctggaagatcaaccattgtaaggtcaggaacgccattcttcttcac |
36313043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 36290301 - 36290557
Alignment:
| Q |
5 |
gatttatcagcctttgttacaacagctaatgtcctcaaaccagttttatcaaccatctgtgacatcctaatagactcacaagtactaaaatcaacagtag |
104 |
Q |
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| T |
36290301 |
gatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaaccatttgtgacatcctaatagactcacaagttgtaaaatcaacagtag |
36290400 |
T |
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| Q |
105 |
cagaaagaacattcaggataatgctctcttcaggagttatatagtccatgataatatccttaatctgatcataaatgttatcaggttgaccatgaacagg |
204 |
Q |
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| T |
36290401 |
cagaaaggacattcgagataatactttcttcaggagttatatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaacagg |
36290500 |
T |
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| Q |
205 |
aacacgagttatacctggaagatcaaccattgtaaggtcaggaacgccattcttctt |
261 |
Q |
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| T |
36290501 |
tacacgtgtgatacctggaagatcaaccatggtaagatcaggaacaccgttcttctt |
36290557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 33579747 - 33579845
Alignment:
| Q |
37 |
cctcaaaccagttttatcaaccatctgtgacatcctaatagactcacaagtactaaaatcaacagtagcagaaagaacattcaggataatgctctcttc |
135 |
Q |
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| T |
33579747 |
cctcaaaccagttttatcaacagtttctgacatccttaatgactcacaagtagagaaatcaatagtagcagaaagaacattcaagataatgctttcttc |
33579845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 15997251 - 15997153
Alignment:
| Q |
37 |
cctcaaaccagttttatcaaccatctgtgacatcctaatagactcacaagtactaaaatcaacagtagcagaaagaacattcaggataatgctctcttc |
135 |
Q |
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| T |
15997251 |
cctcaaatcagttttatcaacagtttctgacatccttaatgactcacaagtagagaaatcaatagtagcagaaagaacattcaagataatgctttcttc |
15997153 |
T |
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