View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3146_low_16 (Length: 263)
Name: NF3146_low_16
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3146_low_16 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 9803776 - 9804027
Alignment:
| Q |
12 |
tcatcatatacattgcacgaatcagaatctttgctattatgatattgtaaatcatgcgagttattcaaatcagagtctacatcaccgttacatcctccat |
111 |
Q |
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| T |
9803776 |
tcatcatatacattgcacgaatcagaatctttgctattatgatattgtaaatcatgcgagttattcaaatcagagtctacatcaccattacatcctccat |
9803875 |
T |
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| Q |
112 |
cttgggacatgctagaggtgacttcacgactagatacatcaaaatcatcgacgataaaacctctcaagtttccttcttcgctttgtgataagtcctctat |
211 |
Q |
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| T |
9803876 |
cttgggacatgctagaggtgacttgacaactagatacatcaaaatcatcgacgataaaatctataaagtttccttcttcgctttgtgataagtcctctat |
9803975 |
T |
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| Q |
212 |
tgatccataatcattatcatgagcctcttcatttgttggaatactttgctga |
263 |
Q |
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| T |
9803976 |
tgatccataatcattatcatgagcctcttcatttgttggaatactttgctga |
9804027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 9828638 - 9828821
Alignment:
| Q |
29 |
cgaatcagaatctttgctattatgatattgtaaatcatgcgagttattcaaatcagagtctacatcaccgttacatcctccatcttgggacatgctagag |
128 |
Q |
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| T |
9828638 |
cgaatcagaatccttgctat---gatcttgtaaatcttgtaagttattcaaatcagagtcgacatcaccattatgtcctccatcttgtgacttgctagag |
9828734 |
T |
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| Q |
129 |
gtgacttcacgactagatacatcaaaatcatcgacgataaaacctctcaagtttccttcttcgctttgtgataagtcctctattgat |
215 |
Q |
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| T |
9828735 |
gtgacttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttccttcctcactttgtgataagtcctctattgat |
9828821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 9755197 - 9755346
Alignment:
| Q |
66 |
tgcgagttattcaaatcagagtctacatcaccgttacatcctccatcttgggacatgctagaggtgacttcacgactagatacatcaaaatcatcgacga |
165 |
Q |
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| T |
9755197 |
tgcgagtcattcaaatcagagtccacatcaccattacgtcctccatcttgtgacttgctagaggtgacttcacaaccagataaatcaaaatcatcaacaa |
9755296 |
T |
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| Q |
166 |
taaaacctctcaagtttccttcttcgctttgtgataagtcctctattgat |
215 |
Q |
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| T |
9755297 |
taaaacctttcaagtttccttcctcactttgtgataagtcctctattgat |
9755346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 259
Target Start/End: Original strand, 7142 - 7353
Alignment:
| Q |
50 |
atgatattgtaaatcatgcgagttattcaaatcagagtctacatcaccgttacatcctc--catcttgggacatgctagaggtgacttcacgactagata |
147 |
Q |
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||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||| | ||||| ||| ||||||||| |||||||| ||||||| |
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| T |
7142 |
atgatcttgtaaatcatgcgagtcatttaaatcagagtccacatcaccgttacgtcctctccttcttgtgacttgctagaggcgacttcacagctagata |
7241 |
T |
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| Q |
148 |
catcaaaatcatcgacgataaaacctctcaagtttccttcttcgctttgtgataagtcctctattgatccataatcattatcatgagcctcttcatttgt |
247 |
Q |
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| T |
7242 |
tatcaaaatcatcaacaataaaacctttcaagtttccttcttcactttgtgataagtcctctattgatccagcatcattatcacgagcatattcatttgt |
7341 |
T |
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| Q |
248 |
tggaatactttg |
259 |
Q |
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|||||||||||| |
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| T |
7342 |
tggaatactttg |
7353 |
T |
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