View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3146_low_2 (Length: 714)
Name: NF3146_low_2
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3146_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 52220175 - 52220415
Alignment:
| Q |
16 |
atcactgatagattcgaaaaaatcactaactcgatttatttaatattggaaaataataccaaagggggtaatatactcaattcagaactcaaatcaataa |
115 |
Q |
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| T |
52220175 |
atcactgatagattcgaaaaaatcactaactcgatttatttaatattggaaaataataccaaagggggtaatatactcaattcagaactcaaatcaataa |
52220274 |
T |
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| Q |
116 |
aatcccnnnnnnnntaaaataaacaattgatcttgaattctcaatagagcatctcgtgaaacaccagatccagtaa-taaagagaaacatgcaatgaaca |
214 |
Q |
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| T |
52220275 |
tatcccaaaaaaaaaaaaataaacaattgatcttgaattctcaatagagcatctcgtgaaacaccagatccagtaaataaagagaaacatgcaatgaaca |
52220374 |
T |
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| Q |
215 |
caagcaatttgtgattcaaaattgaaactcaaaacccacat |
255 |
Q |
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| T |
52220375 |
caagcaatttgtgattcaaaattgaaactcaaaacccacat |
52220415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 519 - 698
Target Start/End: Original strand, 52220676 - 52220855
Alignment:
| Q |
519 |
ggtttgaaattgaattgataagaatggaaataaaattatgagacacattccttaataataaaaaatagatattaacgnnnnnnnngtgattagttaccag |
618 |
Q |
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| T |
52220676 |
ggtttgaaattgaattgataagaatggaaataaaattatgagacacattccttaataataaaaaatagatattaacgaaaaaaaagtgattagttaccag |
52220775 |
T |
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| Q |
619 |
ccaatgccaaccacctaatccaacagctttcttaacaacaccttgaagaccaacaagaaccgattttgtacggttatttc |
698 |
Q |
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| T |
52220776 |
ccaatgccaaccacctaatccaacagctttcttaacaacaccttgaagaccaacaagaaccgattttgtacggttatttc |
52220855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 327 - 456
Target Start/End: Original strand, 52220484 - 52220613
Alignment:
| Q |
327 |
cttgaatgatttggataagaattcataaagtagggtttataacagatataattaaataaaaccccaacaaaaacggtaatcaataagagcttcaaagcaa |
426 |
Q |
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| T |
52220484 |
cttgaatgatttggataagaattcataaagtagggtttataacagatataattaaataaaaccccaacaaaaacggtaatcaataagagcttcaaagcaa |
52220583 |
T |
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| Q |
427 |
ttagatttcagcgtgattgaaggaatgttg |
456 |
Q |
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| T |
52220584 |
ttagatttcagcgtgattgaaggagtgttg |
52220613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 612 - 698
Target Start/End: Original strand, 6721613 - 6721699
Alignment:
| Q |
612 |
ttaccagccaatgccaaccacctaatccaacagctttcttaacaacaccttgaagaccaacaagaaccgattttgtacggttatttc |
698 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |
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| T |
6721613 |
ttaccagccaatgccaaccaccaagaccaacagctttcttaacaacaccacgaagaccaacaagaacagatttagtacggttatttc |
6721699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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