View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3146_low_3 (Length: 648)
Name: NF3146_low_3
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3146_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Original strand, 45302774 - 45303398
Alignment:
| Q |
1 |
ttgatttctttgactatcgcaccactccagccaaatctgcattcaaaaaatgacgaaaaattcagcatgcccttgatctataattgagtcgggaacnnnn |
100 |
Q |
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|||| ||||||||| || ||||||||||||||||||||| |||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||| |
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| T |
45302774 |
ttgagttctttgacaattgcaccactccagccaaatctggattcgaaaaatgacgaaaaatacagcattcccgtgatctataattgagtcgggaacaaaa |
45302873 |
T |
|
| Q |
101 |
nnntgttattccaaatgagaggtgaaatctaagtgaggcccaactaagaatctttttagttgagtgagtatggtggtttgaactttgaagcaatgtttag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45302874 |
aaatgttattccaaatgagaggtgaaatctaagtgaggcccaactaagaatctttttagttgagtgagtatggtggtttgaactttgaagcaatgtttag |
45302973 |
T |
|
| Q |
201 |
gttgttgcctttccttagtgccagccttcagctctaacgtcagtgtaaaaaatttaaaccgtcaatatatcaggaatatacatgtgtgaatttgtaatcc |
300 |
Q |
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| T |
45302974 |
gttgttgcctttccttagtgccagccttcagctctaatgtcagtgtaaaaaatttaaaccgtcaatatatcaggaatatacatgtgtgaatttgtaatcc |
45303073 |
T |
|
| Q |
301 |
cttatgaggaaagtctagataattccttgttagnnnnnnnnntcataacattaacaatgtgtatatattaagggcaattatataattgaacacgtttc-c |
399 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| |
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| T |
45303074 |
cttatgaggaaagtctagataattccttgttagtacaaaaaatcataacattaacaatgtgtatatattaagggcaattatatatttgaatacgcttctt |
45303173 |
T |
|
| Q |
400 |
cnnnnnnnacatacattcaacatcttattttctatctatttttctcttcctatcacatcaccaaccaataacgtaatatctatcacaccattctcattat |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
45303174 |
ttttttttacatacattcaacatcttattttctatctatttttctcatcctatcacatcaccaaccaataacgtaacatctatcacaccactctcattat |
45303273 |
T |
|
| Q |
500 |
ttctttctctctctaatgtagatgagttttgatgtcgaaaaattattttgcgtaaactaaatcaaagtgaaatatatatcatcacaattcataactatta |
599 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
45303274 |
ttctttctctctctaatgcagatgagttttgatgtcgaaaaattattttgcgtaaactaaatcaaagtgaa----atatcatcacaattcatagctatta |
45303369 |
T |
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| Q |
600 |
tccagccacacacatatggttgacaatgtaaat |
632 |
Q |
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| T |
45303370 |
t----ccacacacatatggttgacaatgtaaat |
45303398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 37780666 - 37780612
Alignment:
| Q |
408 |
acatacattcaacatcttattttctatctatttttctcttcctatcacatcacca |
462 |
Q |
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|||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
37780666 |
acattcattcaacatcttattttctctctatttgtctcttcctatcacatcacca |
37780612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 51169614 - 51169659
Alignment:
| Q |
414 |
attcaacatcttattttctatctatttttctcttcctatcacatca |
459 |
Q |
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|||||| || ||||||||||||||| ||||||||| |||||||||| |
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| T |
51169614 |
attcaatattttattttctatctatctttctcttcttatcacatca |
51169659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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