View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3146_low_4 (Length: 459)
Name: NF3146_low_4
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3146_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 43186537 - 43186836
Alignment:
| Q |
19 |
aggccccacttggatctttggacaatgccacttgaatcttaactat-aggaatccacaacactcattttcattccatcttcgaaattcactctgactcgt |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43186537 |
aggccccacttgcatctttggacaatgccacttgaatcttaacttttaggaatccacaacactcattttcattccatcttcgaaattcactctgactcgt |
43186636 |
T |
|
| Q |
118 |
tcttcataacataaattcattcattttcattattcatcgccgaaattcatccggactcgttattaaccaatatatttttatactaaaataatcaaacatt |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43186637 |
tcttcataacataaattcattaattttcattattcatcgcagaaattcatccggactcgttattaaccaatatatttttatactaacataatcaaacatt |
43186736 |
T |
|
| Q |
218 |
aaaaaggatcttggactgtgtcttaccatgagaaacaaaacattgttatcatacgacccgattaagaatattgttttaactatgttactatattctgatt |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43186737 |
aaaaagcatcttggactgtgtcttaccatgagaaacaaaacattgttatcatacgacccgattaagaatattgttttaactatgttactatattctgatt |
43186836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 313 - 437
Target Start/End: Original strand, 43187115 - 43187239
Alignment:
| Q |
313 |
tgattatatatagatcacataggtttttaattttcagtttcaacactgaaaatcttccaatcaacggaatagagaagggaatcaagtgtgtttttgattg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43187115 |
tgattatatatagatcacataggtttttaattttcagtttcaacactgaaaatcttccgatcaatggaatagagaagggaatcaagtgtgtttttgattg |
43187214 |
T |
|
| Q |
413 |
agtttgaattctcatgactgtgtaa |
437 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
43187215 |
agtttgaattctcatgactgtgtaa |
43187239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 23609323 - 23609379
Alignment:
| Q |
56 |
cttaactataggaatccacaacactcattttcattccatcttcgaaattcactctga |
112 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
23609323 |
cttaactgtaggattccacaacactcattttcattccaccagtgaaattcactctga |
23609379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 23622784 - 23622844
Alignment:
| Q |
64 |
taggaatccacaacactcattttcattccatcttcgaaattcactctgactcgttcttcat |
124 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | ||||||| ||||||| || |||||||| |
|
|
| T |
23622784 |
taggaatccacatcactcattttcattccaccaccgaaatttactctgaatcattcttcat |
23622844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University