View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3146_low_5 (Length: 437)
Name: NF3146_low_5
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3146_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 164 - 421
Target Start/End: Original strand, 37303757 - 37304006
Alignment:
| Q |
164 |
aaagctcaatatccaatgttagtttttgaccttaatcattaattaatgggtgaattagatattgtatttgggtttagccatttagcttgtgtgatttgtt |
263 |
Q |
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| T |
37303757 |
aaagctaaatatccaatgttaatttttgaccttaatcattaattaatgggtgaattagatattgtatttgggtttagccatttagcttgtgtgctttg-- |
37303854 |
T |
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| Q |
264 |
ggttttgttgtgatattatatgtaacatttcgtactcttgagttatatatgtgcacttcttgtgatggttagaacttttgttttggttaatatactcttt |
363 |
Q |
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| T |
37303855 |
-------ttgtgatattgtatgtaacatttcgtactcttgagttatatatgtgcacttcttgtgatggttagaacttttgttttggttaatatactcttt |
37303947 |
T |
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| Q |
364 |
agcttgttnnnnnnnnnnttaaaatacaaaatgtta-ttttttcgttgagggtggtaat |
421 |
Q |
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| T |
37303948 |
agcttgttaaaaaaaaaattaaaaaacaaaatgttatttttttcgttgagggtggtaat |
37304006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 37303657 - 37303757
Alignment:
| Q |
21 |
aaaaatcagatattttctccatgttatttgacttgcttgtatttgagttatttaaaaggaaagaaattgccactatttccggcaaaaggagatatcactt |
120 |
Q |
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| T |
37303657 |
aaaaatcagatattttctccatgttatttgacttgcttgtgtttgagttatttagaaggaaagaaattgccactatttccggcaaaaggagatatcactt |
37303756 |
T |
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| Q |
121 |
a |
121 |
Q |
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| T |
37303757 |
a |
37303757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 52625299 - 52625373
Alignment:
| Q |
128 |
tttgatacagttaagttattatctttttcacggttgaaagctcaatatccaatgttagtttttgaccttaatcat |
202 |
Q |
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| T |
52625299 |
tttgataaagttaagctattatctttttcatggttgaaaactaaaagttcaatgttagattttgaccttaatcat |
52625373 |
T |
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