View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3146_low_6 (Length: 429)

Name: NF3146_low_6
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3146_low_6
NF3146_low_6
[»] chr5 (17 HSPs)
chr5 (1-420)||(31464747-31465166)
chr5 (1-419)||(31483566-31483981)
chr5 (57-288)||(31390675-31390900)
chr5 (194-331)||(31387777-31387914)
chr5 (229-330)||(31460376-31460478)
chr5 (205-301)||(31407401-31407497)
chr5 (229-301)||(31416558-31416630)
chr5 (229-299)||(31494135-31494205)
chr5 (232-301)||(31475956-31476025)
chr5 (232-301)||(40843338-40843407)
chr5 (242-318)||(31384407-31384483)
chr5 (58-136)||(31387644-31387722)
chr5 (243-302)||(31395765-31395824)
chr5 (58-117)||(31460208-31460267)
chr5 (232-315)||(31643895-31643978)
chr5 (232-290)||(31463034-31463092)
chr5 (57-98)||(31462866-31462907)


Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 31464747 - 31465166
Alignment:
Q  1 ctttgacatacaaagcgacatgacagcaaaagcagcagacgatataaggctatatgcatctggttttgcgttagctttatcaaagaaaaatgagtaaata 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31464747 ctttgacatacatagcgacatgacagcaaaagcagcagacgatataaggctatatgcatctggttttgcattagctttatcaaagaaaaatgagtaaata 31464846  T
Q  101 gtagtgattgtgaaaactgaaactgccaaatgagctctgaacctgagacttggcgatttttgccatgtgattgcatttgctaacaagtccgcaaggcaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31464847 gtagtgattgtgaaaactgaaactgccaaatgagctctgaacctgagacttggcgatttttgccatgtgattgcatttgctaacaagtccgcaaggcaga 31464946  T
Q  201 taacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31464947 taacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaac 31465046  T
Q  301 aatggatgaaacaaaacacagatatctccatttctttacctgcatcttcctattcaacattttgttgaccttcgacgtcatgttgtttctcaagcgagta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31465047 aatggatgaaacaaaacacagatatctccatttctttacctgcatcttcctattcaacattttgttgaccttcgacgtcatgttgtttctcaagcgagta 31465146  T
Q  401 atatttgctttcatattctt 420  Q
    || ||||||||||| |||||    
T  31465147 atgtttgctttcattttctt 31465166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 31483981 - 31483566
Alignment:
Q  1 ctttgacatacaaagcgacatgacagcaaaagcagcagacgatataaggctatatgcatctggttttgcgttagc---tttatcaaagaaaaatgagtaa 97  Q
    |||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| |||||||||||| |   ||||||||||| | | ||||||    
T  31483981 ctttgacatacaaagcgacatgacagcaaaagcagcaagcgatatcaggctatatgcatccggttttgcgttatcttttttatcaaagatataggagtaa 31483882  T
Q  98 atagtagtgattgtgaaaactgaaactgccaaatgagctctgaacctgagacttggcgatttttgccatgtgattgcatttgctaacaagtccgcaaggc 197  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||||  |||||||| ||      ||||| | ||| ||||| | ||    
T  31483881 atagttgtgattgtgaaaactaaaaatgccaaatgagctctgaacctaagacttggcgacgtttgccatatg------tttgcaatcaaatccgcgatgc 31483788  T
Q  198 agataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtcc 297  Q
    |||||| ||||||||| | |  ||| |||  || |||||| ||| ||||||||||| ||| |||||||||||||| ||||||||||||| | || |||||    
T  31483787 agataatgaaactgaaaacagtgtaaagaattatcttcaacaaactccactttccacatatatgattgaaggaagagcttagagcgtaaaagagtagtcc 31483688  T
Q  298 aacaatggatgaaacaaaacacagatatctccatttctttacctgcatcttcctattcaacattttgttgaccttcgacgtcatgttgtttctcaagcga 397  Q
    || |||||||||||||||||||| | |||||||| || ||| ||||||||||||| ||||||||| ||||| ||| || |||| ||||||||||||||||    
T  31483687 aataatggatgaaacaaaacacacaaatctccatatcattagctgcatcttcctactcaacatttggttgagcttggaagtcacgttgtttctcaagcga 31483588  T
Q  398 gtaatatttgctttcatattct 419  Q
    | ||| ||||||||||| ||||    
T  31483587 gcaatgtttgctttcattttct 31483566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 288
Target Start/End: Original strand, 31390675 - 31390900
Alignment:
Q  57 catctggttttgcgttagctttatcaaagaaaaatgagtaaatagtagtgattgtgaaaactgaaactgccaaatgagctctgaacctgagacttggcga 156  Q
    ||||||||||| |||||||||||||||||||||| |||||||  || || ||||||||||  || | | ||||||||||||| | |||||||||||| ||    
T  31390675 catctggttttccgttagctttatcaaagaaaaaggagtaaactgttgttattgtgaaaatagagaataccaaatgagctctaagcctgagacttggtga 31390774  T
Q  157 tttttgccatgtgattgcatttgctaacaagtccgcaaggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaat 256  Q
     ||||||||| ||      ||||| || |||   |||||||| |||| ||||||||| | |  ||||||| | | ||| || || ||||| |||||||||    
T  31390775 gttttgccatttg------tttgcaaaaaagatggcaaggcaaataatgaaactgaaaacagtgtacagaaaaatctttaacaagttccagtttccaaat 31390868  T
Q  257 agatgattgaaggaagggcttagagcgtaaca 288  Q
    ||||| ||||||||||  |||||||| |||||    
T  31390869 agatggttgaaggaagaacttagagcataaca 31390900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 331
Target Start/End: Original strand, 31387777 - 31387914
Alignment:
Q  194 aggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagca 293  Q
    |||||||||||||||||||| |  |  || ||| ||||||| || || ||||| || |||||||||||| ||||||||| ||| ||||| ||||| ||||    
T  31387777 aggcagataacgaaactgaaaatgctataaagaaataccttaaaaaagttccagttcccaaatagatgagtgaaggaagagctaagagcataacaaagca 31387876  T
Q  294 gtccaacaatggatgaaacaaaacacagatatctccat 331  Q
    |||||||||  |||||||||||| ||| | ||||||||    
T  31387877 gtccaacaacagatgaaacaaaagacacaaatctccat 31387914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 31460376 - 31460478
Alignment:
Q  229 taccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagt-ccaacaatggatgaaacaaaacacagatatct 327  Q
    |||||| || || ||||| || |||||||||||||||||||||| ||| ||||| ||||| |||||| ||||||| ||||||||||||||||| | ||||    
T  31460376 taccttaaaaaagttccagttcccaaatagatgattgaaggaagagctaagagcataacaaagcagtgccaacaacggatgaaacaaaacacacacatct 31460475  T
Q  328 cca 330  Q
    |||    
T  31460476 cca 31460478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 301
Target Start/End: Original strand, 31407401 - 31407497
Alignment:
Q  205 gaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaaca 301  Q
    ||||||||| |||  ||| ||| ||| |||||| |||||||| |||||||||||||| |||||||||| ||| ||||| ||||| |||| |||||||    
T  31407401 gaaactgaaaagagtgtaaagaaatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatccaaca 31407497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 31416558 - 31416630
Alignment:
Q  229 taccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaaca 301  Q
    ||||||||| |||||||| |||||||||||||| ||||| |||| ||||||||| ||||| | ||||||||||    
T  31416558 taccttcaacaaattccaatttccaaatagatggttgaaagaagagcttagagcataacaaatcagtccaaca 31416630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 31494135 - 31494205
Alignment:
Q  229 taccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaa 299  Q
    ||||||||| |||||||| |||||||||||||| ||||| |||| ||||||||| ||||| |||| |||||    
T  31494135 taccttcaacaaattccaatttccaaatagatggttgaacgaagagcttagagcataacaaagcaatccaa 31494205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 31475956 - 31476025
Alignment:
Q  232 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaaca 301  Q
    |||||| |||||||| |||||||||||||  || ||||||| ||||||||| ||||| ||||||||||||    
T  31475956 cttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtccaaca 31476025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 40843338 - 40843407
Alignment:
Q  232 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaaca 301  Q
    |||||| |||||||| |||||||||||||  |||||||||| ||||||||| ||||| | ||||||||||    
T  40843338 cttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtccaaca 40843407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 31384407 - 31384483
Alignment:
Q  242 ttccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaacaatggatgaaacaaaaca 318  Q
    ||||| || |||||||||||||||||||||| ||| ||||| ||| | | ||| |||||||| ||||||||||||||    
T  31384407 ttccatttcccaaatagatgattgaaggaagagctaagagcataataaaacagaccaacaattgatgaaacaaaaca 31384483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 31387644 - 31387722
Alignment:
Q  58 atctggttttgcgttagctttatcaaagaaaaatgagtaaatagtagtgattgtgaaaactgaaactgccaaatgagct 136  Q
    |||||||||| |||||||||||||||| || || ||||||| ||| |||||| ||||||| ||||   |||||||||||    
T  31387644 atctggttttccgttagctttatcaaaaaagaaggagtaaacagtggtgattatgaaaaccgaaaacaccaaatgagct 31387722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 31395824 - 31395765
Alignment:
Q  243 tccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaacaa 302  Q
    |||| ||||||||||||||||||||||||| ||| ||||| ||||| |  ||||||||||    
T  31395824 tccagtttccaaatagatgattgaaggaagagctgagagcataacaaacaagtccaacaa 31395765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 31460208 - 31460267
Alignment:
Q  58 atctggttttgcgttagctttatcaaagaaaaatgagtaaatagtagtgattgtgaaaac 117  Q
    |||||||||| |||||||||||||||| || || ||||||| ||| |||||| |||||||    
T  31460208 atctggttttccgttagctttatcaaaaaagaaggagtaaacagtggtgattatgaaaac 31460267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 315
Target Start/End: Original strand, 31643895 - 31643978
Alignment:
Q  232 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaacaatggatgaaacaaa 315  Q
    |||||| | |||||| | |||||||||||  |||||||||| ||| ||||| ||||| || ||||||||||| |||||| ||||    
T  31643895 cttcaacagattccaatctccaaatagatagttgaaggaagagctaagagcataacaaagtagtccaacaatagatgaagcaaa 31643978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 31463034 - 31463092
Alignment:
Q  232 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacata 290  Q
    |||||| || ||||| |||||||||||||| |||||||||| ||||| ||| |||||||    
T  31463034 cttcaacaagttccaatttccaaatagatggttgaaggaagagcttacagcataacata 31463092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 31462866 - 31462907
Alignment:
Q  57 catctggttttgcgttagctttatcaaagaaaaatgagtaaa 98  Q
    ||||||||||| ||||| |||||||||||||||| |||||||    
T  31462866 catctggttttccgttatctttatcaaagaaaaacgagtaaa 31462907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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