View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3146_low_8 (Length: 385)

Name: NF3146_low_8
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3146_low_8
NF3146_low_8
[»] chr2 (1 HSPs)
chr2 (19-371)||(32898642-32898994)
[»] chr5 (2 HSPs)
chr5 (89-244)||(17415041-17415196)
chr5 (19-75)||(17414983-17415039)
[»] chr6 (2 HSPs)
chr6 (89-244)||(20409621-20409776)
chr6 (19-75)||(20409778-20409834)
[»] chr1 (2 HSPs)
chr1 (89-244)||(46312565-46312720)
chr1 (19-75)||(46312507-46312563)
[»] chr4 (1 HSPs)
chr4 (89-244)||(40169137-40169283)
[»] chr7 (2 HSPs)
chr7 (116-222)||(46482987-46483093)
chr7 (263-343)||(46482880-46482960)


Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 32898642 - 32898994
Alignment:
Q  19 catctccctacactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaacaacactgatctaaaggagcacgtgtc 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32898642 catctccctacaccgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaacaacactgatctaaaggagcacgtgtc 32898741  T
Q  119 ctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaatggaagttttgatctcgtttcaccttctatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  32898742 ctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacaacttcaacagcaacagcaatggaagttttgatcttgtttcaccttctatg 32898841  T
Q  219 aatgcaacaatggatccttttgcaaggtttcagaggaatgtcggtgtttctgcttttcctagcttgagatcactacaagataatcttcagcttcctttct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32898842 aatgcaacaatggatccttttgcaaggtttcagaggaatgtcggtgtttctgcttttcctagcttgagatcactacaagataatcttcagcttcctttct 32898941  T
Q  319 ttttctcctcggcggccgcggcgcagccttttcccggtggtggtgatattctt 371  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32898942 ttttctcctcggccgccgcggcgcagccttttcccggtggtggtgatattctt 32898994  T

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Target: chr5 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 89 - 244
Target Start/End: Original strand, 17415041 - 17415196
Alignment:
Q  89 caacaacactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaat 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||    ||||||||||    
T  17415041 caacaacactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtcgctgcccacaacaacttcagtaacaacaacaat 17415140  T
Q  189 ggaagttttgatctcgtttcaccttctatgaatgcaacaatggatccttttgcaag 244  Q
    ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||    
T  17415141 ggaagctttgatcttgtttctccttctatgaatgctacaattgatccttttgcaag 17415196  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 17414983 - 17415039
Alignment:
Q  19 catctccctacactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaact 75  Q
    ||||||| ||||| |||||||||| |||| |||||||||| |  |||||||||||||    
T  17414983 catctccttacaccgccgctagcatcgccacattcaacggcgaccaaatgtgtaact 17415039  T

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Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 89 - 244
Target Start/End: Complemental strand, 20409776 - 20409621
Alignment:
Q  89 caacaacactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaat 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||| |||||    ||||||||||    
T  20409776 caacaacactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtcgttgcccacaacaacttcagtaacaacaacaat 20409677  T
Q  189 ggaagttttgatctcgtttcaccttctatgaatgcaacaatggatccttttgcaag 244  Q
    ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||    
T  20409676 ggaagctttgatcttgtttctccttctatgaatgctacaattgatccttttgcaag 20409621  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 20409834 - 20409778
Alignment:
Q  19 catctccctacactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaact 75  Q
    ||||||| ||||| |||||||||| |||| |||||||||| |  |||||||||||||    
T  20409834 catctccttacaccgccgctagcatcgccacattcaacggcgaccaaatgtgtaact 20409778  T

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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 89 - 244
Target Start/End: Original strand, 46312565 - 46312720
Alignment:
Q  89 caacaacactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaat 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||| |||||    ||||||||||    
T  46312565 caacaacactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtcgttgcccacaacaacttcagtaacaacaacaat 46312664  T
Q  189 ggaagttttgatctcgtttcaccttctatgaatgcaacaatggatccttttgcaag 244  Q
    ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||    
T  46312665 ggaagctttgatcttgtttctccttctatgaatgctacaattgatccttttgcaag 46312720  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 46312507 - 46312563
Alignment:
Q  19 catctccctacactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaact 75  Q
    ||||||| ||||| |||||||||| |||| |||||||||| |  |||||||||||||    
T  46312507 catctccttacaccgccgctagcatcgccacattcaacggcgaccaaatgtgtaact 46312563  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 244
Target Start/End: Original strand, 40169137 - 40169283
Alignment:
Q  89 caacaacactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaat 188  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||         |||||||||| |||  ||||||| |||||    ||||||||||    
T  40169137 caacaacaccgatctaaaggagcacgtgtcctgtttctccacaacatc---------aaatgttgtcgctgcccacaacaacttcagtaacaacaacaat 40169227  T
Q  189 ggaagttttgatctcgtttcaccttctatgaatgcaacaatggatccttttgcaag 244  Q
    ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||    
T  40169228 ggaagctttgatcttgtttctccttctatgaatgctacaattgatccttttgcaag 40169283  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 46483093 - 46482987
Alignment:
Q  116 gtcctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaatggaagttttgatctcgtttcaccttct 215  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||| ||||| | |||||||||||||||| |||||||| ||||| ||||||    
T  46483093 gtcctatttctccacaatatctagaacatcaaatgttgtctctgtccacaacaacttcagcagcaacaacaatggaagctttgatcttgtttctccttct 46482994  T
Q  216 atgaatg 222  Q
    | |||||    
T  46482993 acgaatg 46482987  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 46482960 - 46482880
Alignment:
Q  263 tgtttctgcttttcctagcttgagatcactacaagataatcttcagcttcctttctttttctcctcggcggccgcggcgca 343  Q
    |||||||  ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  46482960 tgtttctatttttcctagattgaggtcactacaagataatctccagcttcctttctttttctccacggcggccgcggcgca 46482880  T

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