View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3146_low_9 (Length: 383)
Name: NF3146_low_9
Description: NF3146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3146_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 36458473 - 36458155
Alignment:
| Q |
1 |
atcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcggtcggaaactctcatcaagccgcgtcagatagtt |
100 |
Q |
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| T |
36458473 |
atcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcggtcggaaactctcatcaagccgcgtcagatagtt |
36458374 |
T |
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| Q |
101 |
tgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgcacgcaggggtgttatttggtttagaagtgacagt |
200 |
Q |
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| T |
36458373 |
tgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgcacgcaggggtgttatttgggttagaagtgacagt |
36458274 |
T |
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| Q |
201 |
ttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattactttaatgtctatattactactttagtttctcta |
300 |
Q |
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| T |
36458273 |
ttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattactttaatgtctatattactactttagtttctcta |
36458174 |
T |
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| Q |
301 |
aagcttatcatgaattaga |
319 |
Q |
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| T |
36458173 |
aagcttatcatgaaataga |
36458155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 36458164 - 36458127
Alignment:
| Q |
327 |
atgaaatagagagccacataaagtgaaagcctattatc |
364 |
Q |
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| T |
36458164 |
atgaaatagagagccacataaagtgaaagcctattatc |
36458127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 40874816 - 40874742
Alignment:
| Q |
70 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttatttt |
144 |
Q |
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| T |
40874816 |
ggaaagtctcatcaagctggatcagatagtttgttgacgtggcatgcatttaagaaaatgatggatacttatttt |
40874742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 40871718 - 40871658
Alignment:
| Q |
70 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatga |
130 |
Q |
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| T |
40871718 |
ggaaagtcgcatcaagctggatcagatagtttgttgacatggcatgcatttaagaaaatga |
40871658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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