View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3148_high_1 (Length: 469)
Name: NF3148_high_1
Description: NF3148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3148_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 7 - 457
Target Start/End: Complemental strand, 41297544 - 41297103
Alignment:
| Q |
7 |
cttgatacccttgatcttgcaaatgatgattagtagtatgtcttagttcaaaagattgtaaaccaatagaggaagggtttgttgaactaagagagagtga |
106 |
Q |
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| T |
41297544 |
cttgatacccttgatcttgcaaatgatgattagtagtatgtcttagttcaaaagattgtaaaccaatagaggaagggtttgttgaactaagagagagtga |
41297445 |
T |
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| Q |
107 |
aagtccttgacttggtctttcattaccttcacaagggaaaacacatcttaaagatgaatcatcaacttgttgccactgatgatgtgaagatgaatcatga |
206 |
Q |
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| T |
41297444 |
aagtccttgacttggtctttcattaccttcacaagggaaaacacatcttaaagatgaatcatcaacttgttgccactgatgatgtgaagatgaatcatga |
41297345 |
T |
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| Q |
207 |
tgaaccatgttgtttagattctgatcactacttgttgtatcagaaacagtgaaatcttgatgatgatgatagaaattatcattcatggtttttgaagaag |
306 |
Q |
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| T |
41297344 |
tgaaccatgttgtttagattctgatcactacttgttgtatcagaaacagtgaaatcttgatga---tgatagaaattatcattcatggtttttgaagaag |
41297248 |
T |
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| Q |
307 |
aggaaggaccaacatgttgttgacttagttttcctgagaaatttgttttccacatgacagagtttgttgtgtcagtactatgttgttgttgttgaagatg |
406 |
Q |
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| T |
41297247 |
aggaaggaccaacatgttgttgacttagttttcctgagaaatttgttttccacatgacagagtttgttgtgtcagtacta------tgttgttgaagatg |
41297154 |
T |
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| Q |
407 |
cggtttggaaaaacctatcatctccatccctgttgtgagattgaacatctc |
457 |
Q |
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| T |
41297153 |
ttgtttggaaaaacctatcatctccatccctgttgtgagattgaacatctc |
41297103 |
T |
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