View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3148_high_7 (Length: 241)
Name: NF3148_high_7
Description: NF3148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3148_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 49396899 - 49396689
Alignment:
| Q |
13 |
tatactggatcttggtctagtttgttgtttttaccgtacattttgttattattggttgtaatcatggacgatagccacacnnnnnnnnn-tctattttat |
111 |
Q |
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| T |
49396899 |
tatactggatcttggtctagtttgttgtttttaccgtacattttgttattattggttgtaatcatggacgatagccacacaaaaaaaaaatctattttat |
49396800 |
T |
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| Q |
112 |
ttttacttatgaaagatgtttataagaatgaaatgttagagaaaattggtggctcatttgattccgattaacaattcttaaggtataaatggacttggac |
211 |
Q |
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| T |
49396799 |
ttttacttatgaaagatgtttataagaatgaaatgttagagaaagttggtggctcatttgattccgattaacaattcttaaggtataaatggacttggac |
49396700 |
T |
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| Q |
212 |
taacagaacta |
222 |
Q |
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| T |
49396699 |
taacagaacta |
49396689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 29015405 - 29015477
Alignment:
| Q |
123 |
aaagatgtttataagaatgaaatgttagagaaaattggtggctcatttgattccgattaacaattcttaaggt |
195 |
Q |
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| T |
29015405 |
aaagatatttataagaataaaatgttatagaaaattgacagcttattttattctaattaacaattattaaggt |
29015477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 37575652 - 37575588
Alignment:
| Q |
106 |
ttttatttttacttatgaaagatgtttataagaatgaaatgttagagaaaattggtggctcattt |
170 |
Q |
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| T |
37575652 |
ttttttttttacatatgaaagatgtttttaaaaatgaaatgttagaagaagttggtggcttattt |
37575588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 47350650 - 47350606
Alignment:
| Q |
111 |
tttttacttatgaaagatgtttataagaatgaaatgttagagaaa |
155 |
Q |
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| T |
47350650 |
tttttacatatgaaagatgtttataaaactgaaatgttaaagaaa |
47350606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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