View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3148_low_11 (Length: 232)
Name: NF3148_low_11
Description: NF3148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3148_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 1171990 - 1172159
Alignment:
| Q |
1 |
tactagaagtgaaacaaatgtgtttaaaaccaaaagctcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatgttgttgcagaat |
100 |
Q |
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| T |
1171990 |
tactagaagtgaaacaaatgtgtttaaagccaaaaactcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatgttgttgcagaat |
1172089 |
T |
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| Q |
101 |
tctgagtgccattgtacccaccattatacccaccattgtgcccgccattcacgattgagccacctatata |
170 |
Q |
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| T |
1172090 |
tctgagtgccattgtacccaccattatatccaccattgtgcccgccattcgcgattgagccacctatata |
1172159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 1181238 - 1181407
Alignment:
| Q |
1 |
tactagaagtgaaacaaatgtgtttaaaaccaaaagctcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatgttgttgcagaat |
100 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1181238 |
tactagaagtaaaacaaatgtgtttaaagccaaaagctcaaacacaaaatcaaagttgagacacaaaaatgaggccatgcagataatgttgttgcagaat |
1181337 |
T |
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| Q |
101 |
tctgagtgccattgtacccaccattatacccaccattgtgcccgccattcacgattgagccacctatata |
170 |
Q |
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| T |
1181338 |
tctgagtgccattgtacccaccattatatccaccattgtgcccgccattggcgattgagccacctatata |
1181407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 1148459 - 1148559
Alignment:
| Q |
25 |
taaaaccaaaagctcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtacccaccat |
124 |
Q |
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| T |
1148459 |
taaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagataatgttgttgcagaattatgagtaccattgtgcccaccat |
1148558 |
T |
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| Q |
125 |
t |
125 |
Q |
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| T |
1148559 |
t |
1148559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 1164619 - 1164726
Alignment:
| Q |
18 |
atgtgtttaaaaccaaaagctcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtac |
117 |
Q |
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|||||| |||| ||||||||||| ||| ||||||||||| || |||| || |||||||| | | |||||||||| ||||||||| ||||| ||||||| | |
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| T |
1164619 |
atgtgtctaaagccaaaagctcatacataaaatcaatgttgatacacaaatatgaggccctcccgataatgttgatgcagaattatgagtaccattgtgc |
1164718 |
T |
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| Q |
118 |
ccaccatt |
125 |
Q |
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| T |
1164719 |
ccaccatt |
1164726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 1141674 - 1141766
Alignment:
| Q |
6 |
gaagtgaaacaaatgtgtttaaaaccaaaagctcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatgttgttgcagaa |
99 |
Q |
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| T |
1141674 |
gaagtgaaacaa-tatgattataaccaaaagctcaaacataaaataaatgttgagacacaaacataaggccctgcagataatgatgatgcagaa |
1141766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 1137020 - 1137112
Alignment:
| Q |
6 |
gaagtgaaacaaatgtgtttaaaaccaaaagctcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatgttgttgcagaa |
99 |
Q |
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|||||||||||| ||| ||||| ||||||||||||||| |||| ||||| ||||||| || || ||||| ||||||||||| || ||||||| |
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| T |
1137020 |
gaagtgaaacaa-tgtaattaaagccaaaagctcaaacataaaagaaatgttgagacacaaacataaggccctgcagataatgatggtgcagaa |
1137112 |
T |
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