View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3148_low_4 (Length: 365)

Name: NF3148_low_4
Description: NF3148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3148_low_4
NF3148_low_4
[»] chr4 (4 HSPs)
chr4 (1-361)||(54396440-54396800)
chr4 (8-360)||(23587525-23587877)
chr4 (8-360)||(23596377-23596729)
chr4 (286-360)||(35132750-35132824)
[»] chr7 (21 HSPs)
chr7 (11-360)||(8102694-8103043)
chr7 (8-361)||(8017204-8017557)
chr7 (46-360)||(39985708-39986022)
chr7 (290-360)||(7877525-7877595)
chr7 (38-108)||(8581754-8581824)
chr7 (239-360)||(8602229-8602350)
chr7 (240-360)||(8590894-8591014)
chr7 (286-357)||(17260543-17260614)
chr7 (286-360)||(10494166-10494240)
chr7 (290-351)||(8382677-8382738)
chr7 (314-357)||(6789842-6789885)
chr7 (286-360)||(3147574-3147648)
chr7 (227-357)||(8585501-8585631)
chr7 (290-360)||(8636135-8636205)
chr7 (286-360)||(13333248-13333322)
chr7 (23-112)||(7877773-7877862)
chr7 (47-108)||(8570374-8570435)
chr7 (317-357)||(1301797-1301837)
chr7 (47-111)||(8609980-8610044)
chr7 (61-125)||(8628609-8628673)
chr7 (317-361)||(8659696-8659740)
[»] chr2 (11 HSPs)
chr2 (224-360)||(17716485-17716621)
chr2 (149-282)||(5445621-5445754)
chr2 (291-360)||(12234996-12235065)
chr2 (293-360)||(12245198-12245265)
chr2 (8-93)||(17705797-17705882)
chr2 (314-358)||(7542556-7542600)
chr2 (46-93)||(17648100-17648147)
chr2 (46-93)||(17666742-17666789)
chr2 (290-360)||(16657309-16657379)
chr2 (8-93)||(17716746-17716831)
chr2 (8-93)||(17718010-17718095)
[»] chr1 (1 HSPs)
chr1 (290-361)||(4678349-4678420)


Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 54396440 - 54396800
Alignment:
Q  1 tgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396440 tgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatca 54396539  T
Q  101 ccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396540 ccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgc 54396639  T
Q  201 cttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396640 cttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatc 54396739  T
Q  301 tttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttc 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396740 tttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttc 54396800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 23587877 - 23587525
Alignment:
Q  8 ccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcag 107  Q
    |||||||||||||||||||| |||||| | || ||   ||||||||| |||||||| |||||||||||||||||||| || | ||| ||||||||||| |    
T  23587877 ccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctg 23587778  T
Q  108 tagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttct 207  Q
    ||||||| || || ||||| ||||| ||||||||||| || |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | ||    
T  23587777 tagctttgacctcaaagataccttcctcaatagtaagtagggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcacccgtgct 23587678  T
Q  208 cgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgta 307  Q
     | |||||||||||| | |||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |  || |||||  |||| |||||||| |||    
T  23587677 tgtagctttcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgta 23587578  T
Q  308 gcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    ||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||||||    
T  23587577 gcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 23587525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 23596729 - 23596377
Alignment:
Q  8 ccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcag 107  Q
    ||||||||||| |||||||| |||||| | || ||   ||||||||| |||||||| |||||||||||||||||||| || | ||| ||||||||||| |    
T  23596729 ccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctg 23596630  T
Q  108 tagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttct 207  Q
    |||||||||| || ||||| ||||| |||||||||||||| |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | ||    
T  23596629 tagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtact 23596530  T
Q  208 cgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgta 307  Q
     | |||||||||||| | |||||||||||| || |||||||| ||||| |||||||| |||| |||||| |  || |||||  |||||||||| || |||    
T  23596529 tgtagctttcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacattgagtccagaaatgacaccagcatccttagta 23596430  T
Q  308 gcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    ||||||||||| ||||| ||||| || ||||| || || ||||| ||||||||    
T  23596429 gcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt 23596377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 35132750 - 35132824
Alignment:
Q  286 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    |||||||||||||||| | || ||||  |||||||||||| | ||||||||||| ||||||||||| ||||||||    
T  35132750 aatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattctt 35132824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 8102694 - 8103043
Alignment:
Q  11 ctaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtag 110  Q
    |||||||||||||| || |||||| |||||||   |||||||||  | ||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  8102694 ctaatatccttcttgttcttcctcttaaactcttgaacaaaatgggtaaccattctgttatcaaaatcttcaccaccaagatgggtatcacctgcagtag 8102793  T
Q  111 ctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcga 210  Q
    | || ||||| || || || ||||||||||||||||| || ||||| ||||| ||||| ||||| ||||| || | ||||||||  || ||    || |     
T  8102794 ccttaacttcaaatataccctcttcaatagtaagaagtgacacatcaaaagtaccaccacccaaatcaaagatcaacacgttcttctcaccaacacttgt 8102893  T
Q  211 agctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagct 310  Q
     || || || || | ||| || ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |  ||| ||||||||||||| || |||    
T  8102894 cgcctttttgtcaagaccgtaggcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgct 8102993  T
Q  311 tgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    ||||| |||||||||||||| |||||||| ||||| || || ||||||||    
T  8102994 tgacgctgagaatcattgaagtaagcagggacagtgacgacggcattctt 8103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 8017557 - 8017204
Alignment:
Q  8 ccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcag 107  Q
    ||||||||||||||||| || |||||| ||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  8017557 ccactaatatccttcttgttcttcctcttaaactcctgaacaaaatgattaaccattctgttgtcaaaatcttcaccaccaagatgggtatcaccagcag 8017458  T
Q  108 tagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttct 207  Q
    |||| || ||||| || || || |||||||||||||||||||| ||||| ||||| ||||||||||||||||| || | ||| ||||  |||||    ||    
T  8017457 tagccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtaccacctcccaagtcaaagatcaacacattcttctcgccaacact 8017358  T
Q  208 cgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgta 307  Q
     | ||| || || || |  || || ||||| || ||||| || ||||| || ||||| ||||| ||||| |  || | |||  |||| ||||| || ||     
T  8017357 tgtagcctttttgtcaagtccgtacgcaatagctgcagctgttggctcgttgataattctcaaaacattgagtcctgcaatgacaccggcatcctttgtg 8017258  T
Q  308 gcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttc 361  Q
    |||||||| || ||||||||||| ||||| ||||| |||||||| |||||||||    
T  8017257 gcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttc 8017204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 46 - 360
Target Start/End: Original strand, 39985708 - 39986022
Alignment:
Q  46 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaaga 145  Q
    |||||| || |||||||||||||| |||||||| ||||| |||||||| || || || || || |||||||| || ||||| || ||||||||||| ||     
T  39985708 aacaaagtggttcaccattctgttgtcaaaatcctcacctccaagatgggtgtctccggctgtggctttcacctcaaagataccctcttcaatagttagc 39985807  T
Q  146 agagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcag 245  Q
    | ||| ||||| ||||| ||||| || | |||||| || |  || ||||  || ||    || |  |||||||| || | |||||||||||| |||||||    
T  39985808 aaagagacatcaaaagtaccaccaccaaggtcaaagatcaagacattcttctctccaacactggttgctttcttgtcaagaccataagcaatggcagcag 39985907  T
Q  246 cagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagt 345  Q
    |||| |||||||| ||||| | ||  ||||| | ||| | |||| | |||||||| || ||||||||||| || || ||||| || |||||||| |||||    
T  39985908 cagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagt 39986007  T
Q  346 aacaacagcattctt 360  Q
    |||||||||||||||    
T  39986008 aacaacagcattctt 39986022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 7877595 - 7877525
Alignment:
Q  290 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||||||||| ||||||||    
T  7877595 gcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattctt 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 8581754 - 8581824
Alignment:
Q  38 aactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 108  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| || || || ||||| || ||||||||    
T  8581754 aactccgacacaaagtgattcaccattctgttatcaaaatcttcccctcccaggtgagtgtctccagcagt 8581824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 360
Target Start/End: Original strand, 8602229 - 8602350
Alignment:
Q  239 gcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcag 338  Q
    ||||| ||||| |||||||| || |||| ||  ||||| | ||| | ||| |||||||||||||| || ||||  || ||||||||||| |||||||| |    
T  8602229 gcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccg 8602328  T
Q  339 gaacagtaacaacagcattctt 360  Q
    | ||||||||||| ||||||||    
T  8602329 gcacagtaacaactgcattctt 8602350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 360
Target Start/End: Original strand, 8590894 - 8591014
Alignment:
Q  240 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 339  Q
    |||| ||||| || |||||||| |||| ||  |||||||| || | |||  ||||||||||||| |||||||  |  ||||||||||| |||||||| ||    
T  8590894 cagcggcagttggttcattaattatccgcattacattcaagccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctgg 8590993  T
Q  340 aacagtaacaacagcattctt 360  Q
     ||||||||||| ||||||||    
T  8590994 cacagtaacaactgcattctt 8591014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 17260543 - 17260614
Alignment:
Q  286 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcatt 357  Q
    |||| ||||||||||| | || ||||  || ||||||||||||||||||||||||||||||| |||| ||||    
T  17260543 aataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 10494240 - 10494166
Alignment:
Q  286 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    |||||||||||||||  | ||||| |  ||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  10494240 aatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattctt 10494166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 8382738 - 8382677
Alignment:
Q  290 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 351  Q
    |||||||||||||| || ||||  |||||||||||||||||||| ||||| || ||||||||    
T  8382738 gcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaac 8382677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 6789842 - 6789885
Alignment:
Q  314 cgttgagaatcattgaaataagcaggaacagtaacaacagcatt 357  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  6789842 cgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 3147574 - 3147648
Alignment:
Q  286 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    |||| ||||||||||| | || ||||  || |||| |||||||||||||||||| || |||||||| ||||||||    
T  3147574 aataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattctt 3147648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 357
Target Start/End: Complemental strand, 8585631 - 8585501
Alignment:
Q  227 ccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcat 326  Q
    ||||| ||||| || |||||||| || ||||| || |||||||  ||||| |  || | ||| |||||||||||  | || ||||  || ||||||||||    
T  8585631 ccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcat 8585532  T
Q  327 tgaaataagcaggaacagtaacaacagcatt 357  Q
    ||||||||||||| ||||| ||||| |||||    
T  8585531 tgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 8636205 - 8636135
Alignment:
Q  290 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    |||||||||||||| || | || ||| |||||||||||||||||||| || |||||||  || ||||||||    
T  8636205 gcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattctt 8636135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 13333322 - 13333248
Alignment:
Q  286 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    |||||||||||||||| | || || |  || |||||||||||||| ||||| || ||||||||||| ||||||||    
T  13333322 aatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattctt 13333248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 7877862 - 7877773
Alignment:
Q  23 ttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 112  Q
    ||||| |||||| ||||||||   || ||||| |||| ||||||||||||||| || || ||||| || |||||||| || |||||||||    
T  7877862 ttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagct 7877773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 8570374 - 8570435
Alignment:
Q  47 acaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 108  Q
    ||||| ||| ||| |||||||||||||||||||||||| || || ||||| || ||||||||    
T  8570374 acaaagtgagtcaacattctgttatcaaaatcttcacctcccaggtgagtgtctccagcagt 8570435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 1301797 - 1301837
Alignment:
Q  317 tgagaatcattgaaataagcaggaacagtaacaacagcatt 357  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatt 1301837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 8609980 - 8610044
Alignment:
Q  47 acaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagc 111  Q
    ||||| ||||| |||||||||| |||||| || || || ||||| |||||||| |||||||||||    
T  8609980 acaaagtgattaaccattctgtgatcaaagtcctctcctccaaggtgagtatctccagcagtagc 8610044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 8628609 - 8628673
Alignment:
Q  61 cattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaaga 125  Q
    ||||||||||||||| || || |||||||| |||||||  |||||||| ||||| ||||| ||||    
T  8628609 cattctgttatcaaagtcctctccaccaaggtgagtatttccagcagtggctttaacttcaaaga 8628673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 8659696 - 8659740
Alignment:
Q  317 tgagaatcattgaaataagcaggaacagtaacaacagcattcttc 361  Q
    |||||||||||||| || ||||| || ||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttc 8659740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 360
Target Start/End: Complemental strand, 17716621 - 17716485
Alignment:
Q  224 aaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaat 323  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||  | ||| | ||| | ||||||||||||||  || |||||||| |  ||||||     
T  17716621 aaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgagaaa 17716522  T
Q  324 cattgaaataagcaggaacagtaacaacagcattctt 360  Q
     ||| || |||||||| ||||||||||| ||||||||    
T  17716521 aattaaagtaagcagggacagtaacaacggcattctt 17716485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 282
Target Start/End: Complemental strand, 5445754 - 5445621
Alignment:
Q  149 gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag 248  Q
    ||||||||||| |||||||| || |  ||||| | |||||| ||||  || |||| |||| |   |||||| ||||||||||||||||| ||||| ||||    
T  5445754 gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag 5445655  T
Q  249 taggctcattaataatcctcaacacattcaaacc 282  Q
    ||||||| || || ||||||| |||||| |||||    
T  5445654 taggctcgttgatgatcctcatcacattaaaacc 5445621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 12234996 - 12235065
Alignment:
Q  291 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    ||||||||||| | || ||||  |||||||||||||||||||||||||| || |||||||| ||||||||    
T  12234996 caccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattctt 12235065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 12245265 - 12245198
Alignment:
Q  293 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    ||||||||| |||| ||||  || ||||||||| | ||||||||||| ||||||||||||||||||||    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 17705882 - 17705797
Alignment:
Q  8 ccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 93  Q
    |||||||| |||||||| || || ||| | |||||  ||||||| || |||||||||||||||| |||||| ||||| ||||||||    
T  17705882 ccactaatgtccttcttcttctttctcttgaactcttaaacaaagtggttcaccattctgttattaaaatcctcacctccaagatg 17705797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 7542556 - 7542600
Alignment:
Q  314 cgttgagaatcattgaaataagcaggaacagtaacaacagcattc 358  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||    
T  7542556 cgttgagaatcattaaaataagcaggtacagtaacaactgcattc 7542600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 17648147 - 17648100
Alignment:
Q  46 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 93  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17648147 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17648100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 17666789 - 17666742
Alignment:
Q  46 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 93  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17666789 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 16657379 - 16657309
Alignment:
Q  290 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    |||||||||||| | || ||||  || || ||||||||||| ||||| || ||||||||||||||||||||    
T  16657379 gcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 16657309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 17716831 - 17716746
Alignment:
Q  8 ccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 93  Q
    |||||||| |||||||| || || ||| | |||||   |||||| || |||||||||||||||| |||||| ||||| ||||||||    
T  17716831 ccactaatgtccttcttgttctttctcttgaactctcgaacaaagtggttcaccattctgttattaaaatcctcacctccaagatg 17716746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 17718095 - 17718010
Alignment:
Q  8 ccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 93  Q
    |||||||| |||||||| || || ||| | |||||   |||||| || |||||||||||||||| |||||| ||||| ||||||||    
T  17718095 ccactaatgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacctccaagatg 17718010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 4678420 - 4678349
Alignment:
Q  290 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttc 361  Q
    |||||||||||| | |||||||  ||||||||||||||||| || ||||| |||||||||||  ||||||||    
T  4678420 gcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttc 4678349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University