View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3148_low_8 (Length: 255)

Name: NF3148_low_8
Description: NF3148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3148_low_8
NF3148_low_8
[»] chr7 (8 HSPs)
chr7 (1-242)||(25121711-25121951)
chr7 (1-220)||(43782908-43783127)
chr7 (1-239)||(6216367-6216609)
chr7 (43-135)||(24251621-24251713)
chr7 (44-135)||(16732115-16732206)
chr7 (44-135)||(17710249-17710340)
chr7 (21-121)||(44481283-44481383)
chr7 (44-135)||(29200869-29200960)
[»] chr3 (10 HSPs)
chr3 (48-240)||(8751699-8751890)
chr3 (52-239)||(29678432-29678619)
chr3 (116-233)||(13646839-13646957)
chr3 (23-135)||(26046870-26046982)
chr3 (43-135)||(42340190-42340282)
chr3 (45-115)||(48227570-48227640)
chr3 (46-135)||(53497214-53497303)
chr3 (49-117)||(5925688-5925756)
chr3 (1-92)||(21789694-21789785)
chr3 (43-121)||(647083-647161)
[»] scaffold0004 (1 HSPs)
scaffold0004 (85-242)||(243686-243843)
[»] chr4 (7 HSPs)
chr4 (99-242)||(30546685-30546826)
chr4 (43-135)||(49951495-49951587)
chr4 (46-135)||(32576964-32577053)
chr4 (44-135)||(37245766-37245857)
chr4 (43-121)||(51734885-51734963)
chr4 (62-115)||(35750862-35750915)
chr4 (23-135)||(26422495-26422607)
[»] chr6 (3 HSPs)
chr6 (21-135)||(15605885-15605999)
chr6 (46-135)||(15053091-15053180)
chr6 (43-135)||(14680344-14680436)
[»] chr2 (6 HSPs)
chr2 (43-135)||(18344207-18344299)
chr2 (42-121)||(34695816-34695895)
chr2 (42-121)||(34718228-34718307)
chr2 (50-135)||(9710137-9710222)
chr2 (43-115)||(88761-88833)
chr2 (95-135)||(1417946-1417986)
[»] chr5 (5 HSPs)
chr5 (43-135)||(4268281-4268373)
chr5 (18-92)||(12717734-12717808)
chr5 (18-92)||(12778958-12779032)
chr5 (43-135)||(15988662-15988754)
chr5 (47-135)||(27292616-27292704)
[»] chr1 (4 HSPs)
chr1 (43-135)||(5609521-5609613)
chr1 (43-135)||(4395340-4395432)
chr1 (43-115)||(17371650-17371722)
chr1 (43-135)||(44527435-44527527)
[»] chr8 (3 HSPs)
chr8 (46-135)||(11870446-11870535)
chr8 (47-135)||(3606656-3606744)
chr8 (43-135)||(40588643-40588735)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 25121711 - 25121951
Alignment:
Q  1 aaaggagagaactcaagaacatggtgactagtccatgaattagccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||    
T  25121711 aaaggagagaactcaagaacatggtgactagtccatgaattggccgccctagctaaagagtgagcaaccatattcgtttgtcgt-gaataaatgtcacct 25121809  T
Q  101 cgaagttggaatgtagagatagttgataattaataacggaaagtagcatacaaaattcagaaactcctctacgctgagacaatagagaattcacaagagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  25121810 cgaagttggaatgtagagatagttgataattaataacggaaagtagcatacaaaattcagaaactccgctacgcttagacactagagaattcacaagagt 25121909  T
Q  201 gcacgaatccgactcaaaaatgacgttgtgccatcctttgct 242  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  25121910 gcacgaatccgactcaaaaatgacattgtgccatcctttgct 25121951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 43782908 - 43783127
Alignment:
Q  1 aaaggagagaactcaagaacatggtgactagtccatgaattagccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacct 100  Q
    |||||||| ||| ||| |||||||||||||| |||||||   |||||||| ||||||||||||||||| ||||  |||||||| ||||||||  | ||||    
T  43782908 aaaggagaaaacccaaaaacatggtgactagcccatgaaccggccgccctcgctaaagagtgagcaactatatccgcttgtcgccgaataaactttacct 43783007  T
Q  101 cgaagttggaatgtagagatagttgataattaataacggaaagtagcatacaaaattcagaaactcctctacgctgagacaatagagaattcacaagagt 200  Q
    |||||||||||||||||||||| || | ||||||||| |||||||||||  |||||||||||||||| ||||||||||||||| |||||||||||||  |    
T  43783008 cgaagttggaatgtagagatagctggttattaataaccgaaagtagcatgtaaaattcagaaactccgctacgctgagacaatggagaattcacaagcat 43783107  T
Q  201 gcacgaatccgactcaaaaa 220  Q
    ||||||||||||||||||||    
T  43783108 gcacgaatccgactcaaaaa 43783127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 6216609 - 6216367
Alignment:
Q  1 aaaggagagaactcaagaacatggtgactagtccatgaattagccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacct 100  Q
    |||||||| | ||| | |||||||||| ||| |||||||    ||| ||||| ||||||||||||||  || || |||||||| | ||||||  ||||||    
T  6216609 aaaggagaaatctcgaaaacatggtgattagcccatgaaccgtccgtcctagataaagagtgagcaagtatgttcgcttgtcgacaaataaacttcacct 6216510  T
Q  101 cgaagttggaatgtagagatagttgataattaataacggaaagta----gcatacaaaattcagaaactcctctacgctgagacaatagagaattcacaa 196  Q
    | ||||||||||||| ||||| ||  |   ||||||| |||||||    ||||| |||||||||||||||  |||| ||| |||||||||||||||||||    
T  6216509 caaagttggaatgtatagataattagttcctaataaccgaaagtacgtagcatataaaattcagaaactctgctacactgtgacaatagagaattcacaa 6216410  T
Q  197 gagtgcacgaatccgactcaaaaatgacgttgtgccatccttt 239  Q
    |||| || |||||||||| ||||||||| ||||||||||||||    
T  6216409 gagtacatgaatccgactaaaaaatgacattgtgccatccttt 6216367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 24251713 - 24251621
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    ||||||||||||||||  ||||||||||| || |||||||  | || |||  ||||||||||||||||||||| |||||  |||||| |||||    
T  24251713 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 24251621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 16732206 - 16732115
Alignment:
Q  44 ccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||||||||||||  ||||||||||| || |||||||  | || |||  ||||||||||||||||||||| |||||  |||||| |||||    
T  16732206 ccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 16732115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 17710340 - 17710249
Alignment:
Q  44 ccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||||||||||||  ||||||||||| || |||||||  | || |||  ||||||||||||||||||||| |||||  |||||| |||||    
T  17710340 ccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 17710249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 44481383 - 44481283
Alignment:
Q  21 atggtgactagtccatgaattagccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagat 120  Q
    ||||||||||| ||| |||   ||||||||||||||||  ||||||||||| || |||||||  | || |||  |||||||||||||| |||||| ||||    
T  44481383 atggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttgaaatgtaaagat 44481284  T
Q  121 a 121  Q
    |    
T  44481283 a 44481283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 29200869 - 29200960
Alignment:
Q  44 ccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||||||||||||  ||||||||||| || | |||||  | || |||  ||||||||||||||||||||| |||||  |||||| |||||    
T  29200869 ccgccctagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 29200960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 48 - 240
Target Start/End: Original strand, 8751699 - 8751890
Alignment:
Q  48 cctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaataacggaaagtagc 147  Q
    |||||||||||||||||||||||||||| ||||| | | ||||||  |||||||||||||| |||||||||||||| | ||| ||||||| |||||||||    
T  8751699 cctagctaaagagtgagcaaccatattttcttgttgcc-aataaacttcacctcgaagttgaaatgtagagatagtcggtaactaataaccgaaagtagc 8751797  T
Q  148 atacaaaattcagaaactcctctacgctgagacaatagagaattcacaagagtgcacgaatccgactcaaaaatgacgttgtgccatcctttg 240  Q
    ||| ||||||||||||||||  |||||||||| ||||||||||| ||||||||||| |||||||||| |||||| || |||||||||||||||    
T  8751798 atataaaattcagaaactccgatacgctgagataatagagaattaacaagagtgcatgaatccgactaaaaaattacattgtgccatcctttg 8751890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 52 - 239
Target Start/End: Original strand, 29678432 - 29678619
Alignment:
Q  52 gctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaataacggaaagtagcatac 151  Q
    |||||| ||||||||| ||||| ||||||| | ||||||||  ||||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||     
T  29678432 gctaaaaagtgagcaatcatatctgcttgtagccgaataaacttcacctcgaagttagaatgtagagatagttggttattaataaccgaaagtagcatat 29678531  T
Q  152 aaaattcagaaactcctctacgctgagacaatagagaattcacaagagtgcacgaatccgactcaaaaatgacgttgtgccatccttt 239  Q
    |||||||||||||||||||||||||||| ||||  ||| |||||||||| ||| |||| || | ||||||||| ||||||||||||||    
T  29678532 aaaattcagaaactcctctacgctgagataataatgaaatcacaagagtacacaaatctgattaaaaaatgacattgtgccatccttt 29678619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 13646957 - 13646839
Alignment:
Q  116 gagatagttgataattaataacggaaa-gtagcatacaaaattcagaaactcctctacgctgagacaatagagaattcacaagagtgcacgaatccgact 214  Q
    |||||| ||||| |||||||||  ||| |||||||| ||||||||| |||||   |||| ||||||||||||||||||||| |||||||| | | |||||    
T  13646957 gagataattgattattaataaccaaaaagtagcatataaaattcaggaactctgttacgatgagacaatagagaattcacaggagtgcacaatttcgact 13646858  T
Q  215 caaaaatgacgttgtgcca 233  Q
     ||||| ||| ||||||||    
T  13646857 gaaaaaagacattgtgcca 13646839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 26046982 - 26046870
Alignment:
Q  23 ggtgactagtccatgaattagccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatag 122  Q
    ||||||||| ||| |||| |||||||||||||||||  ||||||||||| || |||||||  | || ||| |||||||| ||||| ||||||| |||||     
T  26046982 ggtgactagcccaagaataagccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacgtcacctcaaagttagaatgtaaagataa 26046883  T
Q  123 ttgataattaata 135  Q
     |||||| |||||    
T  26046882 ctgataaataata 26046870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 42340190 - 42340282
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    ||||||||| |||||| |||||||||||| || |||||||  | || |||  ||||||||||||||||||||| |||||| |||||| |||||    
T  42340190 gccgccctatctaaagtgtgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagatagctgataaataata 42340282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 48227640 - 48227570
Alignment:
Q  45 cgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgta 115  Q
    ||||||||||||||  |||| |||||||||||||||||  | || |||| |||||||||||||||||||||    
T  48227640 cgccctagctaaagtatgaggaaccatatttgcttgtctcctaacaaatttcacctcgaagttggaatgta 48227570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 53497303 - 53497214
Alignment:
Q  46 gccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||||||||||  |||||| |||| || |||||||  | ||||||  |||||| |||||||||||||| |||||  ||||||||||||    
T  53497303 gccctagctaaagtatgagcagccatgttcgcttgtctcctaataaacttcaccttgaagttggaatgtaaagataactgataattaata 53497214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 5925688 - 5925756
Alignment:
Q  49 ctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtaga 117  Q
    |||| |||||||||||||| |||||| | |||||| ||||||||  |||||||||||||| || |||||    
T  5925688 ctaggtaaagagtgagcaatcatattcgtttgtcgccgaataaacttcacctcgaagttgaaaagtaga 5925756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 21789694 - 21789785
Alignment:
Q  1 aaaggagagaactcaagaacatggtgactagtccatgaattagccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaa 92  Q
    |||||||| ||||||| || |||||||||||   |||||   ||||| ||||||||||||||||||||||| |  ||||||||  |||||||    
T  21789694 aaaggagaaaactcaaaaatatggtgactagcaaatgaaccggccgctctagctaaagagtgagcaaccatgtccgcttgtcgctgaataaa 21789785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 647083 - 647161
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagata 121  Q
    ||||||||| ||||||  ||||||||||| || | |||||  | || |||| ||||||||||||||||||||| |||||    
T  647083 gccgccctaactaaagtatgagcaaccatgttcgtttgtctcctaacaaatttcacctcgaagttggaatgtaaagata 647161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 85 - 242
Target Start/End: Complemental strand, 243843 - 243686
Alignment:
Q  85 cgaataaatgtcacctcgaagttggaatgtagagatagttgataattaataacggaaagtagcatacaaaattcagaaactcctctacgctgagacaata 184  Q
    ||||||||  |||||||||||||| ||| || ||||||||| |  |||||||| |||||||||||| |||||||||||||||| |||| || |||| |||    
T  243843 cgaataaaattcacctcgaagttgaaatctatagatagttggtctttaataactgaaagtagcatataaaattcagaaactccactacactaagacgata 243744  T
Q  185 gagaattcacaagagtgcacgaatccgactcaaaaatgacgttgtgccatcctttgct 242  Q
    |||||||||||||| ||||||||||||||||||| |||||  ||||||||| ||||||    
T  243743 gagaattcacaagattgcacgaatccgactcaaagatgacactgtgccatcatttgct 243686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 30546685 - 30546826
Alignment:
Q  99 ctcgaagttggaatgtagagatagttgataattaataacggaaagtagcatacaaaattcagaaactcctctacgctgagacaatagagaattcacaaga 198  Q
    |||||||||| |||||||| ||||||| | |||||  || ||||||| ||||  |||||||||||||||  || | |||||||| |||||||||||||||    
T  30546685 ctcgaagttgaaatgtagaaatagttggttattaaggacagaaagtaacata--aaattcagaaactccattatgttgagacaacagagaattcacaaga 30546782  T
Q  199 gtgcacgaatccgactcaaaaatgacgttgtgccatcctttgct 242  Q
     ||||||||| ||||| ||||||||| ||||| |||||||||||    
T  30546783 ctgcacgaattcgactaaaaaatgacattgtgtcatcctttgct 30546826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 49951587 - 49951495
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    ||||||||||||||||  ||||||||||| || |||||||  | || |||  ||||||||||||||||||||| |||||  |||||| |||||    
T  49951587 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 49951495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 32576964 - 32577053
Alignment:
Q  46 gccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||||||||||  ||||||||||| || |||||||  | || |||  ||||||||||||||||||||| |||||  |||||| |||||    
T  32576964 gccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 32577053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 37245766 - 37245857
Alignment:
Q  44 ccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||||||||||||  ||||||||||| || | |||||  | || |||  ||||||||||||||||||||| |||||  |||||| |||||    
T  37245766 ccgccctagctaaagtatgagcaaccatgttcgattgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 37245857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 51734885 - 51734963
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagata 121  Q
    ||||||||||||||||  ||||||||||| ||  ||||||  | || |||  ||||||||||||||||||||| |||||    
T  51734885 gccgccctagctaaagtatgagcaaccatgttcacttgtcacctaacaaacttcacctcgaagttggaatgtaaagata 51734963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 35750915 - 35750862
Alignment:
Q  62 gagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgta 115  Q
    ||||||||||||||| ||||| |||||||||  ||||||| |||||| ||||||    
T  35750915 gagcaaccatatttgtttgtcctcgaataaacttcacctcaaagttgaaatgta 35750862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 26422495 - 26422607
Alignment:
Q  23 ggtgactagtccatgaattagccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatag 122  Q
    ||||||||| ||| ||||  |||||| ||| |||||  ||||||||||| ||||  ||||  | || |||  ||||||||||||||||||||| |||||     
T  26422495 ggtgactagcccaagaataggccgccgtagttaaagtatgagcaaccatgtttgtctgtctcctaacaaacttcacctcgaagttggaatgtaaagataa 26422594  T
Q  123 ttgataattaata 135  Q
     |||||| |||||    
T  26422595 ctgataaataata 26422607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 15605885 - 15605999
Alignment:
Q  21 atggtgactagtccatgaattagccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagat 120  Q
    ||||||||||| ||| |||| |||||||||||||||||  ||||||||||| || |||||||  | || |||  ||||||||||||||||||||| ||||    
T  15605885 atggtgactagcccaagaataagccgccctagctaaagcatgagcaaccatgttcgcttgtctgctaacaaaattcacctcgaagttggaatgtaaagat 15605984  T
Q  121 agttgataattaata 135  Q
    |  |||||| |||||    
T  15605985 aactgataaataata 15605999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 15053091 - 15053180
Alignment:
Q  46 gccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||||||||||  ||||||| ||| |||||||||| || || |||  |||||||||| |||||||||| | ||| ||||||| |||||    
T  15053091 gccctagctaaagtatgagcaatcatgtttgcttgtcttctaacaaacttcacctcgaaattggaatgtaaatataattgataaataata 15053180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 14680436 - 14680344
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||||||| |||||  ||||||||||| || || ||||  | || |||  ||||||||||||||||||||| |||||  |||||| |||||    
T  14680436 gccgccctagttaaagtatgagcaaccatgttcgcatgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 14680344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 18344207 - 18344299
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    ||||||||||||||||  ||||||||||| || |||| ||  | || |||| |||||| |||||||||||||| |||||  ||||||||||||    
T  18344207 gccgccctagctaaagtatgagcaaccatgttcgcttatctcctaacaaatttcaccttgaagttggaatgtaaagataactgataattaata 18344299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 34695816 - 34695895
Alignment:
Q  42 agccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagata 121  Q
    |||||||||||||||||  ||||||||||| || |||||||  | || |||  ||||||||||||||||||||| |||||    
T  34695816 agccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagata 34695895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 34718228 - 34718307
Alignment:
Q  42 agccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagata 121  Q
    |||||||||||||||||  ||||||||||| || |||||||  | || |||  ||||||||||||||||||||| |||||    
T  34718228 agccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagata 34718307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 9710222 - 9710137
Alignment:
Q  50 tagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||||||  ||||||||||| || |||||||  | || |||  ||||||||||||||||||||| |||||  |||||| |||||    
T  9710222 tagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 9710137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 88833 - 88761
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgta 115  Q
    ||||||||||||||||  ||||||||||| || |||||||  | ||||||  |||| | ||||||||||||||    
T  88833 gccgccctagctaaagtatgagcaaccatgttcgcttgtctccaaataaacttcacgttgaagttggaatgta 88761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 1417946 - 1417986
Alignment:
Q  95 tcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    ||||||||||||||||||||| ||||| ||||||| |||||    
T  1417946 tcacctcgaagttggaatgtaaagataattgataaataata 1417986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 4268373 - 4268281
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||||||| |||||  ||||||||||| || |||||||  | ||||||  |||||| |||||||||||||| |||||  ||| ||||||||    
T  4268373 gccgccctagataaagtatgagcaaccatgttcgcttgtctcctaataaacttcaccttgaagttggaatgtaaagataactgagaattaata 4268281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 12717808 - 12717734
Alignment:
Q  18 aacatggtgactagtccatgaattagccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaa 92  Q
    ||||||||||||||  || |||   |||||||| ||||| |  |||||||||||||| |||||||||||||||||    
T  12717808 aacatggtgactagatcaagaacgggccgccctcgctaaggtatgagcaaccatattcgcttgtcgtcgaataaa 12717734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 12779032 - 12778958
Alignment:
Q  18 aacatggtgactagtccatgaattagccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaa 92  Q
    ||||||||||||||  || |||   |||||||| ||||| |  |||||||||||||| |||||||||||||||||    
T  12779032 aacatggtgactagatcaagaacgggccgccctcgctaaggtatgagcaaccatattcgcttgtcgtcgaataaa 12778958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 15988662 - 15988754
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||| |||||||||  ||||||||||| | ||||||||  | || |||  |||||||||||||| |||||| |||||  |||||| |||||    
T  15988662 gccgccttagctaaagtatgagcaaccatgtctgcttgtctcctaacaaacttcacctcgaagttgtaatgtaaagataactgataaataata 15988754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 27292704 - 27292616
Alignment:
Q  47 ccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    ||||||||||||  ||||||||||| || |||||||  |  |||||  |||| | |||||||||||||| |||||  ||||||||||||    
T  27292704 ccctagctaaagtatgagcaaccatgttcgcttgtctcctgataaacttcactttgaagttggaatgtaaagataactgataattaata 27292616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 5609613 - 5609521
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||||||||||| |  ||||||||||| || |||||||  | || |||  ||||||||||||||||||||| |||||  |||||| |||||    
T  5609613 gccgccctagctaatgtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 5609521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 4395432 - 4395340
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    ||||||||||||||||  ||||||||||| || |||||||  | || |||  ||||||| |||||| |||||| |||||  |||||| |||||    
T  4395432 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcaaagttgaaatgtaaagataactgataaataata 4395340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 17371722 - 17371650
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgta 115  Q
    |||||||||||||| |  ||||| |||||||| |||||||  | ||||||  |||||| ||||||||||||||    
T  17371722 gccgccctagctaaggtatgagcgaccatattcgcttgtctcctaataaacttcaccttgaagttggaatgta 17371650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 44527527 - 44527435
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||||||| |||||  |||||| |||| || |||||||  | ||||||  |||||| |||||||||||||| |||||  | ||||||||||    
T  44527527 gccgccctagttaaagtatgagcagccatgttcgcttgtctcctaataaacttcaccttgaagttggaatgtaaagataactaataattaata 44527435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 11870535 - 11870446
Alignment:
Q  46 gccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    |||||||||||||  ||||||||||| || |||||||  | || |||  ||||||||||||| ||||||| |||||  |||||| |||||    
T  11870535 gccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttagaatgtaaagataactgataaataata 11870446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 3606656 - 3606744
Alignment:
Q  47 ccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    ||||||||||||  ||| |||||||||| |||||||  | || |||  ||||||||||||| ||||||| |||||  |||||| |||||    
T  3606656 ccctagctaaagtatgaacaaccatattcgcttgtctcctaacaaacttcacctcgaagttagaatgtaaagataactgataaataata 3606744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 40588643 - 40588735
Alignment:
Q  43 gccgccctagctaaagagtgagcaaccatatttgcttgtcgtcgaataaatgtcacctcgaagttggaatgtagagatagttgataattaata 135  Q
    ||||||||||||||||  || |||| ||| || |||||||  | || |||  ||||||||||||||||||||| |||||  |||||| |||||    
T  40588643 gccgccctagctaaagtatgtgcaatcatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 40588735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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