View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3149_high_1 (Length: 659)
Name: NF3149_high_1
Description: NF3149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3149_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 619; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 10 - 643
Target Start/End: Complemental strand, 28915123 - 28914489
Alignment:
| Q |
10 |
acatcatcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28915123 |
acatcatcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaa |
28915024 |
T |
|
| Q |
110 |
tcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatcta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28915023 |
tcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatcta |
28914924 |
T |
|
| Q |
210 |
atattcattttttcgcttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacgtctatttattccattgtag |
309 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28914923 |
atattcattttttcgtttggtaattaaaatgtaaaggtagtagccaacacatgttttgactcttcgacattgatgtcaacgtctatttattccattgtag |
28914824 |
T |
|
| Q |
310 |
aaattatagaaagctatatctccacatggttattagggcctgtcttttcatttcacgcctaatgtaacatttcttaataagtaatgttatgtgattgaag |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28914823 |
aaattatagaaagctatatctccacatggttattagggcctgtcttttcatttcacgcctaatgtaacatttcttaataagtaatgttatgtgattgaag |
28914724 |
T |
|
| Q |
410 |
ctaatatgtgtcaatggcatagagaaggggccatttaactggtgggaaaaggagaagggtcacacgggatgcgatttaattcacatgggagaagcaatga |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28914723 |
ctaatatgtgtcaatggcatagagaaggggccatttaactggtgggaaaaggagaagggtcacacgggatgcgatttaattcacatgggagaagcaatga |
28914624 |
T |
|
| Q |
510 |
tgagcattaataccaacagccgattgagaaacataagcatactatagatttaatgccacatatgcaatagttgcaacatttattggaatcta-taagagt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28914623 |
tgagcattaataccaacagccgattgagaaacataagcatactatagatttaatgccacatatgcaatagttgcaacatttattggaatctagtaagagt |
28914524 |
T |
|
| Q |
609 |
ttcagttattaaagtgagggaagactagatggtta |
643 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
28914523 |
ttcagttattaaagtgagggaagactagatggtta |
28914489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 91 - 569
Target Start/End: Complemental strand, 28924272 - 28923801
Alignment:
| Q |
91 |
tataccaatttctttgcaatcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaac |
190 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
|
|
| T |
28924272 |
tataccaatttcttcaaaatctagccttaaattaatgctgttcacttgtttcaactattcttttgcctgaaatataaatgtaacagatcctcaccttacc |
28924173 |
T |
|
| Q |
191 |
acatgcttgataaaatctaatattcattttttcgcttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacg |
290 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||| | |
|
|
| T |
28924172 |
acatgcttgataaaatctaatattcattattttgtttgataattaaaatgtaaaggtagtagccagtgcatgttttgactctttgacattgaagtcaaag |
28924073 |
T |
|
| Q |
291 |
tctatttattccattgtagaaattatagaaagctatatctccacatggttattagggcctgtcttttcatttcacgcctaatgtaacatttcttaataag |
390 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||| ||||| ||||| | |
|
|
| T |
28924072 |
tctatttcttccattgtagaaatcatagaaagctatatgtccacatggttattagggcatgtcttttcacttcacgcccaatgtagcatttattaatgtg |
28923973 |
T |
|
| Q |
391 |
taatgttatgtgattgaagctaatat-----gtgtcaatggcatagagaaggggccatttaactggtgggaaaaggagaagggtcacacgggatgcgatt |
485 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||| |||||||||| || ||| ||||||||||||||| ||||| || ||||| |||| |
|
|
| T |
28923972 |
taatgtcatatgattgaagctaatattatacatgtcaatggcat--agaaggggccgttgaaccggtgggaaaaggagaggggtcgcatgggatacgatg |
28923875 |
T |
|
| Q |
486 |
taattcacatgggagaagcaatgatgagcattaataccaacagccgattgagaaacataagcatactatagatttaatgccaca |
569 |
Q |
| |
|
||| ||||| ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28923874 |
taaatcacaggggagaagcaa----------aaataccaacagctcattgagaaacaaaagcatactatagatttaatgccaca |
28923801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 561
Target Start/End: Complemental strand, 28900684 - 28900138
Alignment:
| Q |
14 |
catcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaatcaa |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||| |||||||| |||| |||||||||| ||||| || |||||||||||||| |||| | |
|
|
| T |
28900684 |
catcaggtatccatagatcaagcttgagacataagctagagtatattaatatttgcagctatctacgagtcttctattataccaatttcttcaaaatcta |
28900585 |
T |
|
| Q |
114 |
gcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatctaatat |
213 |
Q |
| |
|
|| || |||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||||| | || |
|
|
| T |
28900584 |
gcctttaatttatcctagtcacttgtttcaactattcttttgcc-gaaatataaatgcaacagaccctcaccttaccacatgcttgataaaatcttaaat |
28900486 |
T |
|
| Q |
214 |
tcattttttcgcttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacgtct-atttattccattgtagaaa |
312 |
Q |
| |
|
||||| || | ||||||||||| |||| ||||||||||||||||||| |||||||||||| ||| ||| | || |||| |||| ||| |||||||||| |
|
|
| T |
28900485 |
tcattactttgtttggtaattaacatgttaaggtagtagccaatacat-ttttgactcttcaacaatgaagcaaatgtctaatttcttcaattgtagaaa |
28900387 |
T |
|
| Q |
313 |
ttatagaaagctatatctccacatggttattagggcctgtcttttcatttcacgcctaatgtaacatttcttaataagtaatgttatgtgattgaagcta |
412 |
Q |
| |
|
| ||||||||||||||||||| |||||||||| ||| |||||||| | |||| | | ||| || |||| |||| ||||||| || ||| | |||||| |
|
|
| T |
28900386 |
tcatagaaagctatatctccaaatggttattaaggcttgtcttttaacttcatgtccaatatatcattcactaatgtgtaatgtcatatgactaaagcta |
28900287 |
T |
|
| Q |
413 |
atatgtgtcaatggcatagagaaggggccatttaactggtgggaaaaggagaagggtcacacgggatgcgatttaattcacatgggagaagcaatgatga |
512 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||| | || ||| ||||| |||||||||||||| || |
|
|
| T |
28900286 |
atatatgtcaatggcatagagaaggggccattgaactgatgggaaaaggagaggggtcacatgggatacaatgtaaatcacaggggagaagcaatgagga |
28900187 |
T |
|
| Q |
513 |
gcattaataccaacagccgattgagaaacataagcatactatagattta |
561 |
Q |
| |
|
||| ||||| ||||| | |||||||||| |||||||||||| ||||| |
|
|
| T |
28900186 |
gcaataatatcaacaacttcttgagaaacagaagcatactatatattta |
28900138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 14 - 409
Target Start/End: Complemental strand, 28933225 - 28932823
Alignment:
| Q |
14 |
catcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaatcaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||| |||||||||||||| |||| | |
|
|
| T |
28933225 |
catcaggtatccatagatcaagtttgagacttaagctagagtattttaatatttatagctatctactagtctactactataccaatttcttcaaaatcta |
28933126 |
T |
|
| Q |
114 |
gcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatctaatat |
213 |
Q |
| |
|
| || |||||||||||| | ||||| ||||||||||||||||| ||||||||||||| ||| | ||| | |||||||| ||||| |||| || | |
|
|
| T |
28933125 |
tccttcggttaatgctattcgcatgtttaaactattcttttgcctg-aatataaatgcaatggattcatgccttaccacatgctggataatatctcatgt |
28933027 |
T |
|
| Q |
214 |
tcattttttcgcttggtaa-ttaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaac-gt-------ctatttattccat |
304 |
Q |
| |
|
|||| || | ||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||| |||||| || | |||| |||||| |
|
|
| T |
28933026 |
tcatattat-gcttggtaagttaaaatgtaaaggtagtagccaatacatgttttgactcttctgcgttgaagtcaactgtcaaagcccaatttcttccat |
28932928 |
T |
|
| Q |
305 |
tgtagaaattatagaaagctatatctccacatggttattagggcctgtcttttcatttcacgcctaatgtaacatttcttaataagtaatgttatgtgat |
404 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||||| ||||||||||||| |||| | ||| ||||||| |||||| | ||| | ||||||| |
|
|
| T |
28932927 |
tgtagtaatcatagaaagctatatctatgcatggttattagagcctgtcttttcacctcacatccaatataacattcattaatatgcaatatcatgtgat |
28932828 |
T |
|
| Q |
405 |
tgaag |
409 |
Q |
| |
|
||||| |
|
|
| T |
28932827 |
tgaag |
28932823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 324 - 515
Target Start/End: Complemental strand, 28890166 - 28889975
Alignment:
| Q |
324 |
tatatctccacatggttattagggcctgtcttttcatttcacgcctaatgtaacatttcttaataagtaatgttatgtgattgaagct-aatatgtgtca |
422 |
Q |
| |
|
||||||| ||| ||||||||||| ||||| |||||||| |||||||||| ||||||| ||||| ||||||| |||||||||| | | ||||| ||||| |
|
|
| T |
28890166 |
tatatcttcacgtggttattaggacctgtattttcattccacgcctaatataacattcattaatgtgtaatgtcatgtgattgatgttaaatatatgtca |
28890067 |
T |
|
| Q |
423 |
atggcatagagaaggggccatttaactggtgggaaaaggagaagggtcacacgggatgcgatttaattcacatgggagaagcaatgatgagca |
515 |
Q |
| |
|
|| |||||||||||||| ||| ||| ||||||||||||| ||| |||||| | ||| | || ||| ||||| ||||||| |||||| ||||| |
|
|
| T |
28890066 |
atatcatagagaaggggcgattgaaccggtgggaaaagga-aagagtcacatgagatacaatgtaaatcacaggggagaaacaatgaggagca |
28889975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 28924334 - 28924286
Alignment:
| Q |
14 |
catcaggtatccatagatcaagtttgagacttaagctagaggatattaa |
62 |
Q |
| |
|
||||||||||||||| |||||| |||||| ||||||| ||| ||||||| |
|
|
| T |
28924334 |
catcaggtatccatatatcaagattgagatttaagctggagcatattaa |
28924286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 577 - 631
Target Start/End: Complemental strand, 29403908 - 29403853
Alignment:
| Q |
577 |
tagttgcaacatttattggaatctat-aagagtttcagttattaaagtgagggaag |
631 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
29403908 |
tagttgcaatatttattggaatctaggaagagtttcagttattaaagagagggaag |
29403853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 643
Target Start/End: Original strand, 20039426 - 20039488
Alignment:
| Q |
582 |
gcaacatttattggaatctat-aagagtttcagttattaaagtgagggaagactagatggtta |
643 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| || ||||| ||||| ||||| |
|
|
| T |
20039426 |
gcaacatttattggaatctaggaagagtttcagttattcaagagaaggaagcctagagggtta |
20039488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University