View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3149_high_10 (Length: 242)
Name: NF3149_high_10
Description: NF3149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3149_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 43201030 - 43200806
Alignment:
| Q |
18 |
gttaggtccaccaggaaccctaaatactataaccccttgtgcagcatgtaagctattaagaagaagatgtgctcaagagtgtcccttttctccctatttc |
117 |
Q |
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| T |
43201030 |
gttaggtccaccaggaaccctaaatactataaccccttgtgcagcatgtaagctattaagaagaagatgtgctcaagagtgtcccttttctccctatttc |
43200931 |
T |
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| Q |
118 |
tctcctcatgaaccccaaaagtttgcttctgttcacaaagtttttggtgccagcaacgtctcaaaaatgcttatggtaaacattaattaaatatatttaa |
217 |
Q |
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| T |
43200930 |
tctcctcatgaaccccaaaagtttgcttctgttcacaaagtttttggtgccagcaacgtctcaaaaatgcttatggtaaacattaattaaatatatttaa |
43200831 |
T |
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| Q |
218 |
ttataatgtcatatatatcatatat |
242 |
Q |
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| T |
43200830 |
ttataatgtcatatatatcatatat |
43200806 |
T |
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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 36232833 - 36232669
Alignment:
| Q |
18 |
gttaggtccaccaggaaccctaaatactataaccccttgtgcagcatgtaagctattaagaagaagatgtgctcaagagtgtcccttttctccctatttc |
117 |
Q |
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| T |
36232833 |
gttaggtccttcaggaacactaaatacaactactccttgtgctgcatgcaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatttc |
36232734 |
T |
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| Q |
118 |
tctcctcatgaaccccaaaagtttgcttctgttcacaaagtttttggtgccagcaacgtctcaaa |
182 |
Q |
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| T |
36232733 |
tctcctcatgagcctcagaagtttgcttctgtccacaaagtctttggtgctagcaacgtctcaaa |
36232669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 188
Target Start/End: Complemental strand, 31869453 - 31869312
Alignment:
| Q |
47 |
taaccccttgtgcagcatgtaagctattaagaagaagatgtgctcaagagtgtcccttttctccctatttctctcctcatgaaccccaaaagtttgcttc |
146 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||| | || || || || ||||| ||||| || || ||||| || ||||| ||||| | |
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| T |
31869453 |
taaccccttgtgctgcatgtaagctattgagaagaagatgtgctgaggaatgccctttctctccttatttttcaccacatgagcctcaaaaatttgcagc |
31869354 |
T |
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| Q |
147 |
tgttcacaaagtttttggtgccagcaacgtctcaaaaatgct |
188 |
Q |
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| T |
31869353 |
tgttcataaagtctttggtgctagcaatgtctctaaattgct |
31869312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 32513213 - 32513116
Alignment:
| Q |
76 |
agaagaagatgtgctcaagagtgtcccttttctccctatttctctcctcatgaaccccaaaagtttgcttctgttcacaaagtttttggtgccagcaa |
173 |
Q |
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|||||||||||||||||||| |||| |||| |||| || ||| || || |||| || || || |||||| |||||||||||| |||||||| ||||| |
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| T |
32513213 |
agaagaagatgtgctcaagattgtctctttgctccttacttccctgctgatgagcctcacaaatttgctaatgttcacaaagtctttggtgctagcaa |
32513116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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