View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3149_high_2 (Length: 598)
Name: NF3149_high_2
Description: NF3149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3149_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 41403302 - 41403870
Alignment:
| Q |
1 |
acagatgcagaatccctaaaggtatgtttaaagattcatgattatattttatggtcacaccaacaaataaataaaagaattatttagaattattgtattg |
100 |
Q |
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| T |
41403302 |
acagatgcagaatccctaaaggtatgtttaaagattcatgattatattttatggtcacaccaacaaataaataaaagaa----------ttattgtattg |
41403391 |
T |
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| Q |
101 |
tatataataattgtggttgaatcaaatataaaatataaatatcaggtaagtcaacatagagaaatatcaaatgctaaaggtcaggctagtagtgggaatg |
200 |
Q |
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| T |
41403392 |
tatataataattgtggttgaatctaatataaaatataaatatcaggtaagtcaacatagagaaatatcaaatgctaaaggtcaggctagtagtgggaatg |
41403491 |
T |
|
| Q |
201 |
gacttcatcagaagaaagatgtcaagacaacaacggatcaaggttcccttaacagagacatttcaattaaattcaaaaacaatgatgatgttttggaggt |
300 |
Q |
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| T |
41403492 |
cacttcatcagaagaaagatgtcaatacaacaacagatcaaggttcccttaacagagacatttcaattaaattcaaaaacaatgatgatgttttggaggt |
41403591 |
T |
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| Q |
301 |
aattaatgtggagaaaaatgcattactcaaatttctaagagatatagacattggtggtnnnnnnnttcatcaaactcctcacaataaagcgaaattgaca |
400 |
Q |
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| T |
41403592 |
aattaatgtggagaagaatgcattactcaaatttctaagagatatagacattggtggtaaaaaaattcatcaaactcctcacaataaagcgaaattgaca |
41403691 |
T |
|
| Q |
401 |
aaatcaggatcatttcctttaactgcgccttctaaggtgaaaaacattagctctagtaccttccggtccaagcaaactgaaatttggcactttcccaagg |
500 |
Q |
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| T |
41403692 |
aaatcaggatcatttcctttaaccgcgccttctaaggtgaaaaacattagctctagtaccttccggtccaagcaaactgaaatttggcactttcccaagg |
41403791 |
T |
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| Q |
501 |
gggaaaagttgctagctggaactcaggctccaaaaaagcttggatcaagtttagtgaaagatatttcttatgaaacgtc |
579 |
Q |
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| T |
41403792 |
gggaaaagttgctagctggaactcaggctccaaaaaagcttgggtcaagtttagtgaaagatatttcttatgaaacgtc |
41403870 |
T |
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