View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3149_high_3 (Length: 434)

Name: NF3149_high_3
Description: NF3149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3149_high_3
NF3149_high_3
[»] chr5 (4 HSPs)
chr5 (18-242)||(3643270-3643494)
chr5 (279-434)||(3643531-3643686)
chr5 (381-434)||(7524961-7525014)
chr5 (388-434)||(1716513-1716559)
[»] chr4 (9 HSPs)
chr4 (380-434)||(3461203-3461257)
chr4 (380-434)||(49106590-49106644)
chr4 (380-434)||(50077260-50077314)
chr4 (381-434)||(49108694-49108747)
chr4 (388-434)||(11652453-11652499)
chr4 (389-434)||(26984728-26984773)
chr4 (389-434)||(26998801-26998846)
chr4 (395-434)||(26982549-26982588)
chr4 (389-434)||(48205832-48205877)
[»] chr2 (15 HSPs)
chr2 (379-434)||(9023438-9023493)
chr2 (380-434)||(8973304-8973358)
chr2 (380-434)||(8979314-8979368)
chr2 (380-434)||(9020839-9020893)
chr2 (380-434)||(9026778-9026832)
chr2 (380-434)||(9032045-9032099)
chr2 (380-434)||(30732000-30732054)
chr2 (381-434)||(43850042-43850095)
chr2 (382-434)||(32918074-32918126)
chr2 (388-434)||(2841078-2841124)
chr2 (388-434)||(9008021-9008067)
chr2 (381-434)||(8984686-8984739)
chr2 (390-434)||(30733990-30734034)
chr2 (390-434)||(19232460-19232504)
chr2 (380-434)||(9030390-9030444)
[»] chr8 (10 HSPs)
chr8 (380-434)||(41841213-41841267)
chr8 (385-434)||(40054309-40054358)
chr8 (382-434)||(44878977-44879029)
chr8 (382-434)||(44880892-44880944)
chr8 (384-434)||(37679751-37679801)
chr8 (388-434)||(10944460-10944506)
chr8 (388-434)||(37682057-37682103)
chr8 (381-431)||(42872514-42872564)
chr8 (129-174)||(44878715-44878760)
chr8 (129-174)||(44881161-44881206)
[»] chr6 (3 HSPs)
chr6 (380-434)||(10791713-10791767)
chr6 (380-434)||(10795951-10796005)
chr6 (388-434)||(30521242-30521288)
[»] chr1 (17 HSPs)
chr1 (380-434)||(14654401-14654455)
chr1 (380-434)||(14664192-14664246)
chr1 (380-434)||(14669770-14669824)
chr1 (380-434)||(14706080-14706134)
chr1 (380-434)||(14708570-14708624)
chr1 (380-434)||(14716283-14716337)
chr1 (380-434)||(28366260-28366314)
chr1 (380-434)||(33988062-33988116)
chr1 (381-434)||(14676625-14676678)
chr1 (381-434)||(14683743-14683796)
chr1 (381-434)||(38175591-38175644)
chr1 (388-434)||(14652525-14652571)
chr1 (388-434)||(14662316-14662362)
chr1 (388-434)||(14667172-14667218)
chr1 (388-434)||(14674481-14674527)
chr1 (388-434)||(14679859-14679905)
chr1 (381-434)||(14681592-14681645)
[»] chr3 (1 HSPs)
chr3 (390-434)||(15758564-15758608)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 3643270 - 3643494
Alignment:
Q  18 gaataaagaagaaatttgcggtgtataagaatcaaaactcgcaagttactaagcgaacttacaatccatgagggatgtttctagacggctcaactatccg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643270 gaataaagaagaaatttgcggtgtataagaatcaaaactcgcaagttactaagcgaacttacaatccatgagggatgtttctagacggctcaactatccg 3643369  T
Q  118 tcatgttaagagttcaacaagtgaaaatgagcagaagatacaaatgtgaaaaagattacgagcttgtgaatattgatgcactctaaatgatggatactac 217  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643370 tcatgttaagagttcaacaagtgaaaatgagcagaagatacagatgtgaaaaagattacgagcttgtgaatattgatgcactctaaatgatggatactac 3643469  T
Q  218 tcaagcataggagtgcaacgaattg 242  Q
    ||||||||||||||||||| |||||    
T  3643470 tcaagcataggagtgcaacaaattg 3643494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 279 - 434
Target Start/End: Original strand, 3643531 - 3643686
Alignment:
Q  279 gttaggaagagtctaccaagcaagctgatgctgagtcccacatcgaggagttatgagagaaagtgagtggatgtgggatatnnnnnnngaagcgagactt 378  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  3643531 gttaggaagagactaccaagcaagctgatgctgagtcccacatcgaggagttatgagagaaagtgagtggatgtgggatataaaaacagaagcgagactt 3643630  T
Q  379 actttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  3643631 actttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 3643686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 7524961 - 7525014
Alignment:
Q  381 tttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  7524961 tttcaagtcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 7525014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 388 - 434
Target Start/End: Complemental strand, 1716559 - 1716513
Alignment:
Q  388 tcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  1716559 tcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 1716513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 3461257 - 3461203
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  3461257 ctttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 3461203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 49106644 - 49106590
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  49106644 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 49106590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 50077314 - 50077260
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  50077314 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 50077260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 49108747 - 49108694
Alignment:
Q  381 tttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  49108747 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 49108694  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 388 - 434
Target Start/End: Complemental strand, 11652499 - 11652453
Alignment:
Q  388 tcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  11652499 tcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 11652453  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 26984773 - 26984728
Alignment:
Q  389 catacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgtt 26984728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 26998846 - 26998801
Alignment:
Q  389 catacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgtt 26998801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 434
Target Start/End: Original strand, 26982549 - 26982588
Alignment:
Q  395 tttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgtt 26982588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 48205832 - 48205877
Alignment:
Q  389 catacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||||||||||||| || | |||||| ||||||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgtt 48205877  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 379 - 434
Target Start/End: Original strand, 9023438 - 9023493
Alignment:
Q  379 actttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  9023438 actttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 9023493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 8973304 - 8973358
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  8973304 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 8973358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 8979314 - 8979368
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  8979314 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 8979368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 9020839 - 9020893
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  9020839 ctttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgtt 9020893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 9026778 - 9026832
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  9026778 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 9026832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 9032045 - 9032099
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  9032045 ctttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctgtt 9032099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 30732000 - 30732054
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  30732000 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 30732054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 43850042 - 43850095
Alignment:
Q  381 tttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  43850042 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 43850095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 32918074 - 32918126
Alignment:
Q  382 ttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  32918074 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 32918126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 388 - 434
Target Start/End: Complemental strand, 2841124 - 2841078
Alignment:
Q  388 tcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  2841124 tcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 2841078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 9008021 - 9008067
Alignment:
Q  388 tcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  9008021 tcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 9008067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 8984686 - 8984739
Alignment:
Q  381 tttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||| ||||    
T  8984686 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgtt 8984739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 30733990 - 30734034
Alignment:
Q  390 atacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||||| |||| |||||||||||||||||||||||    
T  30733990 atacctttctcggccttttggctaagatcaagtgtagtatctgtt 30734034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 390 - 434
Target Start/End: Complemental strand, 19232504 - 19232460
Alignment:
Q  390 atacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgtt 19232460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 9030390 - 9030444
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||  ||||| ||||| |||| |||||||||||||||||||||||    
T  9030390 ctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgtt 9030444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 41841267 - 41841213
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  41841267 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 41841213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 40054309 - 40054358
Alignment:
Q  385 aattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  40054309 aattcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 40054358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 44878977 - 44879029
Alignment:
Q  382 ttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  44878977 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 44879029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 44880944 - 44880892
Alignment:
Q  382 ttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  44880944 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 44880892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 37679751 - 37679801
Alignment:
Q  384 caattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  37679751 caatttatacctttctcggccttttggctaagatcaagtgtagtatctgtt 37679801  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 434
Target Start/End: Complemental strand, 10944506 - 10944460
Alignment:
Q  388 tcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||||    
T  10944506 tcatacctttctcgaccttttggctaagatcaagtgtagtatctgtt 10944460  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 37682057 - 37682103
Alignment:
Q  388 tcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgtt 37682103  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 431
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  381 tttcaattcatacctttctcggcctcttggataagatcaagtgtagtatct 431  Q
    |||||| |||||||||||||||||| |||| |||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 44878715 - 44878760
Alignment:
Q  129 gttcaacaagtgaaaatgagcagaagatacaaatgtgaaaaagatt 174  Q
    ||||||||||||||||| | ||||||||| ||||||||||||||||    
T  44878715 gttcaacaagtgaaaataaacagaagatagaaatgtgaaaaagatt 44878760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 44881206 - 44881161
Alignment:
Q  129 gttcaacaagtgaaaatgagcagaagatacaaatgtgaaaaagatt 174  Q
    ||||||||||||||||| | ||||||||| ||||||||||||||||    
T  44881206 gttcaacaagtgaaaataaacagaagatagaaatgtgaaaaagatt 44881161  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 10791767 - 10791713
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  10791767 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 10791713  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 10796005 - 10795951
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  10796005 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 10795951  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 30521242 - 30521288
Alignment:
Q  388 tcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||| ||| |||| | |||||||||||||||||||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgtt 30521288  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 14654455 - 14654401
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14654455 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14654401  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 14664246 - 14664192
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14664246 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14664192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 14669824 - 14669770
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14669824 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14669770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 14706080 - 14706134
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14706080 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14706134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 14708570 - 14708624
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14708570 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14708624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 14716283 - 14716337
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14716283 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14716337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 28366314 - 28366260
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  28366314 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 28366260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 33988062 - 33988116
Alignment:
Q  380 ctttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  33988062 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 33988116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 14676625 - 14676678
Alignment:
Q  381 tttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14676625 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14676678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 14683743 - 14683796
Alignment:
Q  381 tttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14683743 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14683796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 38175644 - 38175591
Alignment:
Q  381 tttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  38175644 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 38175591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 14652525 - 14652571
Alignment:
Q  388 tcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14652571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 14662316 - 14662362
Alignment:
Q  388 tcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14662362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 388 - 434
Target Start/End: Complemental strand, 14667218 - 14667172
Alignment:
Q  388 tcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14667218 tcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14667172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 14674481 - 14674527
Alignment:
Q  388 tcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14674481 tcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14674527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 14679859 - 14679905
Alignment:
Q  388 tcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14679859 tcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14679905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 14681592 - 14681645
Alignment:
Q  381 tttcaattcatacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    |||||| | |||||||||||||||| |||| |||||||||||||||||||||||    
T  14681592 tttcaacttatacctttctcggccttttggctaagatcaagtgtagtatctgtt 14681645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 434
Target Start/End: Complemental strand, 15758608 - 15758564
Alignment:
Q  390 atacctttctcggcctcttggataagatcaagtgtagtatctgtt 434  Q
    ||||||||||| |||| |||| |||||||||||||| ||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgtt 15758564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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