View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3149_high_7 (Length: 331)
Name: NF3149_high_7
Description: NF3149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3149_high_7 |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: scaffold0657 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 7695 - 7392
Alignment:
| Q |
18 |
tggtggtagttgatcaatgtgttgtgtaatccagatattcaatttgcttaagggaacatcttagtctttgattttaatctttgaatgcttgattcatttt |
117 |
Q |
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| T |
7695 |
tggtggtagttgatcagtgtgttgtgtaatccagatattcaatttgcttaagagaacatcttagtctttgattttgatctttgaatgcttgattcatttt |
7596 |
T |
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| Q |
118 |
gtgtgttgttagcaagactttagagattagaagtgttgaaattgctttgactaaattgctatatgcatagagttgtggtgatactttaccttataaatga |
217 |
Q |
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| T |
7595 |
gtgtgttgttagcaagactttagagattagaagtgttgaaattgctttgactaaattgctatatgcatagagttgtggtgatactttaccttataaatga |
7496 |
T |
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| Q |
218 |
tttttataggattagcctatcaatttcctttgttgatgttcttgttattataatttgnnnnnnnagtctgtcactaaaactgttttactgtattttgttc |
317 |
Q |
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| T |
7495 |
tttttataggattagcctatcaatttcctttgttgatgttcttgttattataatttgtttttttagtctgtcactaaaactgttttactgtattttgttt |
7396 |
T |
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| Q |
318 |
tctg |
321 |
Q |
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|||| |
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| T |
7395 |
tctg |
7392 |
T |
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Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 42863399 - 42863495
Alignment:
| Q |
75 |
atcttagtctttgattttaatctttgaatgcttgattcattttgtgtgttgttagcaagactttagagattagaagtgttgaaattgctttgactaa |
171 |
Q |
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| T |
42863399 |
atctttgtctttgattttgatctttgaatgcttgattcattttgtgtgttgttagcaaaactttagagattaaaagtgttgaaattgctttgactaa |
42863495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 1202779 - 1202697
Alignment:
| Q |
18 |
tggtggtagttgatcaatgtgttgtgtaatccagatattcaatttgcttaagggaac------atcttagtctttgattttaa |
94 |
Q |
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| T |
1202779 |
tggtggtagttgatcagtgtgttgtgtgatccagatattcaatttgcttaagagaacacaattatcttagtctttgattttaa |
1202697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 19813858 - 19813776
Alignment:
| Q |
18 |
tggtggtagttgatcaatgtgttgtgtaatccagatattcaatttgcttaagggaac------atcttagtctttgattttaa |
94 |
Q |
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| T |
19813858 |
tggtggtagttgatcagtgtgttgtatgatccagatattcaatttgcttaagagaacacaattatcttagtctttgattttaa |
19813776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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