View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3149_low_11 (Length: 256)
Name: NF3149_low_11
Description: NF3149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3149_low_11 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 2432836 - 2433059
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2432836 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2432935 |
T |
|
| Q |
114 |
cattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2432936 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgccaaagcttccaatgctcataatttcatatcaatgttg |
2433035 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggtt |
237 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2433036 |
ccacaaggatatgatactcaggtt |
2433059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 2572637 - 2572414
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2572637 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
2572538 |
T |
|
| Q |
114 |
cattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
2572537 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttg |
2572438 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggtt |
237 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2572437 |
ccacaaggatatgatactcaggtt |
2572414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 2620111 - 2620334
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2620111 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2620210 |
T |
|
| Q |
114 |
cattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
2620211 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttg |
2620310 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggtt |
237 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2620311 |
ccacaaggatatgatactcaggtt |
2620334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 2448703 - 2448926
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2448703 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2448802 |
T |
|
| Q |
114 |
cattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
2448803 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtggatgctgctaaagcttccaatgctcataatttcatttcattgttg |
2448902 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggtt |
237 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2448903 |
ccacaaggatatgatactcaggtt |
2448926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 2677473 - 2677250
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2677473 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2677374 |
T |
|
| Q |
114 |
cattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
2677373 |
cattatggagaatatactttttggaagagaggatgctacatatgaagaaatcgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttg |
2677274 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggtt |
237 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2677273 |
ccacaaggatatgatactcaggtt |
2677250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 2586421 - 2586644
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2586421 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
2586520 |
T |
|
| Q |
114 |
cattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
2586521 |
catcaaggagaatatactttttggaagagaggatgctacatttgaagatgttgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttg |
2586620 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggtt |
237 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2586621 |
ccacaaggatatgatactcaggtt |
2586644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 2600215 - 2599992
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2600215 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2600116 |
T |
|
| Q |
114 |
cattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||| ||||| |
|
|
| T |
2600115 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtgaatgctgctaaaacttctaatgctcataatttcatttcattgttg |
2600016 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggtt |
237 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
2600015 |
ccacaagtatatgatactcaggtt |
2599992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 2645035 - 2644812
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2645035 |
agattcttcttgatggagttgccattcataagttgcaacttcagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2644936 |
T |
|
| Q |
114 |
cattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
2644935 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtagatgctgctaaagtttccaatgctcataatttcatttcattgttg |
2644836 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggtt |
237 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
2644835 |
ccacaaggatatgatacgcaggtt |
2644812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 17872804 - 17872688
Alignment:
| Q |
21 |
tcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagcattaag |
120 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||| |||| |||||||||||| ||||| || || ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17872804 |
tcttgatggagtagctattcgtaacttgcagattaaatggcttaggtcaatgatggggttggttagtcaagaacctgctttatttgcaacaagcattaaa |
17872705 |
T |
|
| Q |
121 |
gagaatatactttttgg |
137 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
17872704 |
gagaatataatttttgg |
17872688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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