View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3149_low_12 (Length: 250)
Name: NF3149_low_12
Description: NF3149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3149_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 35913747 - 35913510
Alignment:
| Q |
1 |
ttagtctaacgtctttaacctgacagattggacaaatgaagattacttttaaacctcattcctttaatgtagatataaaggatttactctccaatgttta |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |
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| T |
35913747 |
ttagtctaacgtctttaacctgacagattgaacaaatgaagattacttttaaacctcggtcctttaatgtagatataaaggatttgctcttcaatgttta |
35913648 |
T |
|
| Q |
101 |
accattcttattcaagatttgttcatttgtgtgttcgttcattcttgcgtatgcaacatctcctaagtgtggttgtatcgaagagggagttacttccagt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35913647 |
accattcttattcaagatttgttcatttgtgtgttcgttcattcttgcgtatgcaacatctcctaagtatggttgtatcgaagagggagttacttccagt |
35913548 |
T |
|
| Q |
201 |
agagtatgctaaaaaatgtgtaagtgtccttccgccta |
238 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| |
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| T |
35913547 |
agagtatgctaaaaaatttgtaagtggccttccgccta |
35913510 |
T |
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