View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3149_low_15 (Length: 239)
Name: NF3149_low_15
Description: NF3149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3149_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 46187274 - 46187073
Alignment:
| Q |
15 |
cttttataaataaaaatttcatatacaacaactagtaatggacactaatgttgct--ttcatctaacaagagtacaagaaggactattgctgctacaaat |
112 |
Q |
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| T |
46187274 |
cttttataaataaaaatttcatatacaacaactagtaatgaacactaatgttgctagttcatctaacaagagtacaagaacgactattgctgctacaaat |
46187175 |
T |
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| Q |
113 |
actttctccttacaagtgtccgaagccataaatgttaggcatgaaaatgcaatgaaaatactctacaagatggagagaattttagataatggagaagaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46187174 |
actttctccttacaagtgtccgaagccataaatgttaggcatgaaaatgcaatgaaaatactctacaagatg-------ttttagataatggagaagaat |
46187082 |
T |
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| Q |
213 |
tgaatatcc |
221 |
Q |
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||||||||| |
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| T |
46187081 |
tgaatatcc |
46187073 |
T |
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