View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3149_low_17 (Length: 229)
Name: NF3149_low_17
Description: NF3149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3149_low_17 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 41922216 - 41921973
Alignment:
| Q |
1 |
acctcattaacttgaaagtatgttccattaagaggaaaacgggctctcattgcagttcggcatggtatctgtttcataaaattttaaaccttgta----- |
95 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
41922216 |
acctcattaacttgaaagtatgttccattcagaggaaaacgggctctcattgcagttcggcatggtatctgtttcataaaatgttaaatcttgtagccct |
41922117 |
T |
|
| Q |
96 |
----------aaaagttgggattcacaaatagtagtttcatattttcactcaccagaagtgttccaggaactgtttcagtctgactactctcttcctcat |
185 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41922116 |
tttatttgtaaaaagttgggattcacaaataatagtttcatattttcactcaccagaagtgttccaggaactgtttcagtctgactactctcttcctcat |
41922017 |
T |
|
| Q |
186 |
gcaagtcagtcttgctagatttgcccgagctttctaattcggct |
229 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
41922016 |
gcaagtcagtcttgcttgattcgcccgagctttctaattcggct |
41921973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1699504 - 1699271
Alignment:
| Q |
1 |
acctcattaacttgaaagtatgttccattaagaggaaaacgggctctcattgcagttcggcatggtatctgtttcataaaattttaaaccttgta----- |
95 |
Q |
| |
|
||||||||||||||||||||||||||||| | || |||| ||| |||||||||||||||||||||||||||||||||||| || || || || |
|
|
| T |
1699504 |
acctcattaacttgaaagtatgttccattcaatgggaaacacgctttcattgcagttcggcatggtatctgtttcataaaatgttgaatctattagccct |
1699405 |
T |
|
| Q |
96 |
----aaaagttgggattcacaaatagtagtttcatattttcactcaccagaagtgttccaggaactgtttcagtctgactactctcttcctcatgcaagt |
191 |
Q |
| |
|
|||| | | |||| || ||||||| | ||| ||| ||| ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
1699404 |
cttgaaaatattgtgttcaaaactagtagtgttatactttaacttaccagaagtgttccaagaactgttttagtctgactactttcttcctcatgcaagt |
1699305 |
T |
|
| Q |
192 |
cagtcttgctagatttgcccgagctttctaattc |
225 |
Q |
| |
|
|||||||||| |||| | |||||||||||||||| |
|
|
| T |
1699304 |
cagtcttgcttgattcgtccgagctttctaattc |
1699271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 36001413 - 36001332
Alignment:
| Q |
1 |
acctcattaacttgaaagtatgttccattaagaggaaaacgggctctcattgcagttcggcatggtatctgtttcataaaat |
82 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| || ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36001413 |
acctcattaacttgaaagtatgttccattcaagggaaatcgagctctcattgcagttcgacatggtatctgtttcataaaat |
36001332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 36001273 - 36001185
Alignment:
| Q |
137 |
accagaagtgttccaggaactgtttcagtctgactactctcttcctcatgcaagtcagtcttgctagatttgcccgagctttctaattc |
225 |
Q |
| |
|
|||||||||||||| ||||||||| ||| |||| |||||||||| ||||||| |||||||| |||| || ||||| |||||||| |
|
|
| T |
36001273 |
accagaagtgttcctggaactgttagagtttgacctttctcttcctcctgcaagttggtcttgcttgattcacctgagctctctaattc |
36001185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University