View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3149_low_18 (Length: 222)
Name: NF3149_low_18
Description: NF3149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3149_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 21056755 - 21056583
Alignment:
| Q |
34 |
gaaatgatgtcgagtaaatcaaaatacaggtgcaagagaagcatttttctcaagcgatttaatgtaaattaaacaacgcctaaatatcaagaaatgtata |
133 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
21056755 |
gaaacgatgtcgagtaaatcaaaatacaggtgcaagagaagcatttttctcaagcgatttaatgtaaattaaacaatgcttaaatatcaagaaatgtata |
21056656 |
T |
|
| Q |
134 |
ctgtataaaattcaggtgcatgttgcataatgtataaaattgtatgattcatattcaccttcgagatcttcat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21056655 |
ctgtataaaattcaggtgcatgttgcataatgtataaaattgtatgattcatattcaccttcgagatcttcat |
21056583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 26365252 - 26365350
Alignment:
| Q |
34 |
gaaatgatgtcgagtaaatcaaaatacaggtg--caagagaagcatttttctcaagcgatttaatgtaaattaaacaacgcctaaatatcaagaaatgta |
131 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| ||| |||||||| |||||||| ||||| ||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
26365252 |
gaaatgacgtcaagtaaatcaaaatacaggtgtgcaa-agaagcatgtttctcaaacgattcaatgtgaattaatcaacacctaaatatcaagaaatgta |
26365350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University