View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3149_low_4 (Length: 394)
Name: NF3149_low_4
Description: NF3149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3149_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 11855782 - 11855413
Alignment:
| Q |
11 |
caaaggcacgtacgaaaaggtcattgatccagcaatggacatcaacgaggaaggcttggagagtttcaggatcatttcagaattggcaagccactgctgt |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11855782 |
caaaggctcgtacgaaaaggtcattgatccagcaatggacatcaacgaggaaggcttggagagtttcaggatcatttcagaattggcaagccactgctgt |
11855683 |
T |
|
| Q |
111 |
gcaagggagcctcatcagcgtcccgatatgggatacgtagtgaatgtgttagcacctcttgttgagatttggaagccggctgaacctaatgctgatgaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11855682 |
gcaagggagcctcatcagcgtcccgatatgggatacgtagtgaatgtgttagcacctcttgttgagatttggaagccggctgaacctaatgctgatgaca |
11855583 |
T |
|
| Q |
211 |
tgtatgggattgacttgtacatgggtttgcctcaagcaccgagtaagttgcagaatcttgaaggaatgagcaacacactcgatgtttcgtattgttcgtc |
310 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11855582 |
tgtatgggattgacttgtatatgggtttgcctcaagcaccgagtaagttgcagaatcttgaaggaatgagcaacacactcgatgtttcgtattgttcgtc |
11855483 |
T |
|
| Q |
311 |
aaaggctgctagttctgagaatacacagtcgagtataccaccccggtctcctggatttgttgattccttt |
380 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11855482 |
gaaggctgctagttctgagaatacgcagtcgagtataccaccccagtctcctggatttgttgattccttt |
11855413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 24 - 380
Target Start/End: Original strand, 11838070 - 11838426
Alignment:
| Q |
24 |
gaaaaggtcattgatccagcaatggacatcaacgaggaaggcttggagagtttcaggatcatttcagaattggcaagccactgctgtgcaagggagcctc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
11838070 |
gaaaaggtcattgatccagcaatggacatcgacgaggaaggcttggagagtttcaggactattgcaggattggctagccactgttgtgcaagggagccta |
11838169 |
T |
|
| Q |
124 |
atcagcgtcccgatatgggatacgtagtgaatgtgttagcacctcttgttgagatttggaagccggctgaacctaatgctgatgacatgtatgggattga |
223 |
Q |
| |
|
|||||||||| || |||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||| |||||| || ||||||||||| |
|
|
| T |
11838170 |
atcagcgtcctgacatgggacacgtagtgaatgtgctagcaccccttgtcgagatttggaagccggctgaacctgatgttgatgatatatatgggattga |
11838269 |
T |
|
| Q |
224 |
cttgtacatgggtttgcctcaagcaccgagtaagttgcagaatcttgaaggaatgagcaacacactcgatgtttcgtattgttcgtcaaaggctgctagt |
323 |
Q |
| |
|
|||| | ||| ||||||||||||||| || ||||| |||||||| ||||||||||||||||||||| |||||||||||| |||||||| |||||||||| |
|
|
| T |
11838270 |
cttggatatgagtttgcctcaagcactgattaagtggcagaatcatgaaggaatgagcaacacacttgatgtttcgtatacttcgtcaatggctgctagt |
11838369 |
T |
|
| Q |
324 |
tctgagaatacacagtcgagtataccaccccggtctcctggatttgttgattccttt |
380 |
Q |
| |
|
| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
11838370 |
tgtgagaatacacagtcaagtataccacctaggtctcctggatttgcagattccttt |
11838426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 23 - 369
Target Start/End: Original strand, 11850752 - 11851098
Alignment:
| Q |
23 |
cgaaaaggtcattgatccagcaatggacatcaacgaggaaggcttggagagtttcaggatcatttcagaattggcaagccactgctgtgcaagggagcct |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || ||| |||||||||||| || ||||||||||||||| |
|
|
| T |
11850752 |
cgaaaaggtcattgatccagcaatggacatagacgaggaaggcctggagagtttcaggactatggcaggattggcaagccaatgttgtgcaagggagcct |
11850851 |
T |
|
| Q |
123 |
catcagcgtcccgatatgggatacgtagtgaatgtgttagcacctcttgttgagatttggaagccggctgaacctaatgctgatgacatgtatgggattg |
222 |
Q |
| |
|
||||||||||| || |||||| | |||||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
11850852 |
catcagcgtcctgacatgggacatgtagtgaatgtgctagcacctcttgtcgagatttggaagccggctgaacctgaagctgatgacatgtatgggattg |
11850951 |
T |
|
| Q |
223 |
acttgtacatgggtttgcctcaagcaccgagtaagttgcagaatcttgaaggaatgagcaacacactcgatgtttcgtattgttcgtcaaaggctgctag |
322 |
Q |
| |
|
||||| | || |||| ||||||| || ||||||| || |||||||||||||| |||||||||||| ||||||||| | | ||| || | ||||||| | |
|
|
| T |
11850952 |
acttggatataagttttcctcaaggacttagtaagtggccgaatcttgaaggaacgagcaacacacttgatgtttcgaaatcttcttcgatggctgctgg |
11851051 |
T |
|
| Q |
323 |
ttctgagaatacacagtcgagtataccaccccggtctcctggatttg |
369 |
Q |
| |
|
|| |||| |||||||||| ||||| || || |||||||||||||||| |
|
|
| T |
11851052 |
ttgtgagtatacacagtcaagtatccctcctcggtctcctggatttg |
11851098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 27442379 - 27442121
Alignment:
| Q |
24 |
gaaaaggtcattgatccagcaatggacatcaacgaggaaggcttggagagtttcaggatcatttcagaattggcaagccactgctgtgcaagggagcctc |
123 |
Q |
| |
|
||||| |||||||||||||||||| | || ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| || ||||||| |
|
|
| T |
27442379 |
gaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacactgctgtgaaaaggagccta |
27442280 |
T |
|
| Q |
124 |
atcagcgtcccgatatgggatacgtagtgaatgtgttagcacctcttgttgagatttggaagccggctgaacctaatgctgatgacatgtatgggattga |
223 |
Q |
| |
|
|| |||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| || || |
|
|
| T |
27442279 |
ataagcgtcccgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatgga |
27442180 |
T |
|
| Q |
224 |
cttgtacatgggtttgcctcaagcaccgagtaagttgcagaatcttgaaggaatgagca |
282 |
Q |
| |
|
|||| ||| |||| ||| ||| | ||| |||| | |||| |||||||||||||||| |
|
|
| T |
27442179 |
cttgcctatgagtttacctgaagaaatgagcaagtggaagaaccttgaaggaatgagca |
27442121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University