View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3149_low_5 (Length: 387)
Name: NF3149_low_5
Description: NF3149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3149_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 23231314 - 23230946
Alignment:
| Q |
1 |
ggtcgcaacaagatgaggaatttatcgaagtccagatgagaaacgcctatccataatggtaaaaatagggctcttgctagtggaacaactgacaaagaga |
100 |
Q |
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| T |
23231314 |
ggtcacaacaagatgaggaatttatcgaagtccagatgagaaacacctatccataatggtaaaaatagggctcttgctagtggaacaactgacaaagtgc |
23231215 |
T |
|
| Q |
101 |
ctcgaagaaaacacatatttgtttgactgaaccgtagatgaaatgtcgggaatagaatgaagcattccccagaaaaggtagaagcaacaagaaagcagtc |
200 |
Q |
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| T |
23231214 |
ctcgaagaaaccacatatttgtttgactgaaccgtagatgaaatgtcgggaatagaatgaagcattccccagaaaaggtagaagcaaccataaagcagtc |
23231115 |
T |
|
| Q |
201 |
tcaacctcttaaaggctgacttaataaccgaagccaaatatacaaattggttatagaacgtagtgttggtcaacaaggcatgccccaaggacacccaccc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23231114 |
tcaacctcttaaaggctgacttaataaccgaagccaaatatacaaattggttatagaacgtagtgttggtcaacaaggcatgccccaaggacacctaccc |
23231015 |
T |
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| Q |
301 |
ccttcccaacattgatgatttaccagacaactcttcatgtttgaaatttctatctttcttggacgtata |
369 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23231014 |
ccttcctaacattgatgatttactagacaactcttcatgtttgaaatttctatctttcttggacgtata |
23230946 |
T |
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